Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00688 ATGTGCATGATCCTGCTGAAACTGCTACTCTTCCTCATATGGGCTTCTTCTCCATCTCTTTCCACCTCCATGACCCAGCTTGAGACACTCTTGGCCATCAGAGACTCTCTAGACCCAGAGAACCGCGTGTTGCTCTCATGGACCCCGCATTCGGACCCCTGCAGTAGTGCCTCTTTTGAGGGTGTGGCTTGCAACGAACAAGGCCTTGTTACCAATATTTCACTTCAAGGAAAGGGTCTATACGGAAGAGTACCTGACGCTTTGGCTGGTCTCAAGAGCTTGACGGGTCTCTTCCTTCATTTCAATGCCCTCAATGGGATATTACCAAAAGAACTTGCCACTTTGACTGAGCTAACTGATTTGTATCTCAATGTCAATAACCTCTCTGGTGATATCCCTCGTGAGATTGGCAATATGTCAAATCTTCAAGAGTTTACAGTTTTGCAGCTTTGTTATAACAAGTTCAGTGGAAGTATACCTACTGAACTGGGAAGGTTGAGGAAGCTCAGTGTTGTTGCACTGCAATATAATCAATTAAACAGCGCTATTCCTGCGAGTTTGGGTGAAGTGGGGACATTGGCGCGATTGGATCTGAGCTTTAATAGCCTTTTCGGTCCAATTCCGATCACATTGGCTAATGCACTTAAACTGGAGACTCTGAATATTCGAAACAATTCTCTCTCTGGCCGAGTTCCTACAGCTCTGAGAAGACTCAAAGGTGGGTTTCAGTACATGAACAATCCTGGTCTATGTGGGACTGGGTTTGCTAATTTAGATTCTTGCAAAGCAGTAAGCACTTCAGACCCGGTTAGACCCGAACCATATGAACCTGGTGATTTTCCTACCAAAGATCTTCCTGCATCCATTGAACCAAATCATGAAAGCTGCCGAGGTGGTAATTGTAAAAGGACATCGAAATCTTCAAAACTTGGTCTGGTTTTTACCGTCGTCGGAGTCATTTTTGCTTCAACTATTGCTGGATTGTTTTTGGTCTTTTGGCGACGTAGACAGAATCAGAAAATTGGAAGCTCTGATAACCGGCTTAGTAAGCCAGTGGGTAAGAAAAGTGCGTGTCCTCTTATCAGTTTGGAGTATTCTAACGGTTGGGACCCATTAGACAAAGGTCGAAGTGGGTATTCCCAGGAAGTTCTGGAGAGCTTTATGTTTAATCTTGAAGAAGTAGAACGCGCAACTCAAAGCTTCTCTGAGGTAAATTTATTGGGGAAGAGCGATTCTTCAGCTGTGTACCGAGGGATTTTGAGAGATGGTTCTGTTGTGGCTATAAAGTGCATTGCCAAGACAAGTTGCAAATCTGACGAAGGTGAGTTCTTGAAAGGTTTGAAGATATTGACCTCGTTGAGGCATGAAAATCTAGTTCGGTTGAGAGGGTTTTGCTGTTCAAAAGGGCGCGGGGAATGTTTTCTGATCTATGACTCTCTCTCTAATGGGAGTTTGTTGCAGTATCTTGATGTTAAGAGAAACAGTGGTAAGGTACTTGATTGGTCCACCAGAGTGTTCATCATTCGTGGTATTGCCAAAGGTATCGATTATCTGCATAGGAAGAAAGGAAGCAAACATGGTATAGTTCACCAAAATATATCAGCTGAAAATATACTTCTGGATGCCCGGTATAAGGCTTTACTTGCAGATTCAGGATTACACAATCTTCTTCAAGATGATGTTGTTTTTTCTTCCCTGAAAGCTAGTGCTGCTATGGGATATCTGCCTCCAGAGTACACAACAACTGGTCGTTTGACCGAAAAGAGTGATGTGTATGCGTTTGGAGTGATTGTTTTGCAGCTTCTCACTGGAAAACGTGATATCACCCAGTTAAATTGCCAAAGTGCTACTCTGAAAGATATAGTTGATGAGAATCTTGAAGGGATGTTCTCAGAATCAGAGGCGACCAACCTACGAAGAGTTGCTTTGCTTTGCACCCACGAGTCCCCACATCTTCGACCATCTATGGACACCCTAATGCTTCAACTGGATGATAAACAGTGGTAG 2007 0.437 MCMILLKLLLFLIWASSPSLSTSMTQLETLLAIRDSLDPENRVLLSWTPHSDPCSSASFEGVACNEQGLVTNISLQGKGLYGRVPDALAGLKSLTGLFLHFNALNGILPKELATLTELTDLYLNVNNLSGDIPREIGNMSNLQEFTVLQLCYNKFSGSIPTELGRLRKLSVVALQYNQLNSAIPASLGEVGTLARLDLSFNSLFGPIPITLANALKLETLNIRNNSLSGRVPTALRRLKGGFQYMNNPGLCGTGFANLDSCKAVSTSDPVRPEPYEPGDFPTKDLPASIEPNHESCRGGNCKRTSKSSKLGLVFTVVGVIFASTIAGLFLVFWRRRQNQKIGSSDNRLSKPVGKKSACPLISLEYSNGWDPLDKGRSGYSQEVLESFMFNLEEVERATQSFSEVNLLGKSDSSAVYRGILRDGSVVAIKCIAKTSCKSDEGEFLKGLKILTSLRHENLVRLRGFCCSKGRGECFLIYDSLSNGSLLQYLDVKRNSGKVLDWSTRVFIIRGIAKGIDYLHRKKGSKHGIVHQNISAENILLDARYKALLADSGLHNLLQDDVVFSSLKASAAMGYLPPEYTTTGRLTEKSDVYAFGVIVLQLLTGKRDITQLNCQSATLKDIVDENLEGMFSESEATNLRRVALLCTHESPHLRPSMDTLMLQLDDKQW* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00688 668 FunFam Protein NSP-INTERACTING KINASE 2 23 176 - -
Lapu1g00688 668 FunFam Protein NSP-INTERACTING KINASE 2 373 479 - -
Lapu1g00688 668 Gene3D Ribonuclease Inhibitor 24 143 IPR032675 -
Lapu1g00688 668 SUPERFAMILY Protein kinase-like (PK-like) 378 663 IPR011009 -
Lapu1g00688 668 Pfam Leucine Rich Repeat 216 235 IPR001611 GO:0005515
Lapu1g00688 668 SUPERFAMILY L domain-like 23 239 - -
Lapu1g00688 668 CDD STKc_IRAK 407 659 - -
Lapu1g00688 668 Gene3D Phosphorylase Kinase; domain 1 376 478 - -
Lapu1g00688 668 PANTHER LEUCINE RICH REPEAT KINASE 2 50 147 - -
Lapu1g00688 668 ProSiteProfiles Protein kinase domain profile. 401 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00688 668 Gene3D Transferase(Phosphotransferase) domain 1 480 668 - -
Lapu1g00688 668 Pfam Protein tyrosine and serine/threonine kinase 405 662 IPR001245 GO:0004672|GO:0006468
Lapu1g00688 668 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lapu1g00688 668 Gene3D Ribonuclease Inhibitor 144 261 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00688 Lapu-Chr1 19828419 19831618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00688 1 514 Miscellaneous Gene Families AT4G22730 48.030 1.33e-161 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Lapu1g00688 PK_Tyr_Ser-Thr 7.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00688 - - var:108327466 1179.47