Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00673 ATGGACAAGCACAAGTGCAAGCTTTGCTTCAGGAGCTTCTCCAATGGGAGAGCCTTGGGGGGTCACATGCGTTCTCACATGATGAACCTTCCTCTCTCGAAGCCCGACGAAGCGTCACCTCGAACCATCCAACTCAGCTTCGAAGCCGAATCAGCTTCTTCTTCATCTTCCTCGTCATCCGATGATGACGACGACGACGCTGACAAGGCTCTCGGTTACGGCCTTAGAGAGAACCCCAAACGAAGCATTCGCCTCGTCGATCCCGAATTCTCGTTCGCAGCCGCAGACACTGGCTCCGCGATCCTCCATGACAGAGAGAGCGAATCCGAGTCATCCAAAAGCAACCCAACTCGTAAAAGATCCAAAAGGCCGTGGAATAATAATAATAACAACAACAACAATTATTATTATTATAACTATAATAATAATAACAATAATGATACTAACAACGATACCACCACCAGCATCAAGAAGCAAGCTTTCGGAGCCGAATATGAAGCCCTGATGAAGAAGAAGAGTAAGACAGAATCGTGGGTGGACCATGAACCTGCTAGCTCGGTTTCCGAAGCAACGACCGAGGAAGACGTGGCGTTTTGTCTGATGCTGCTTTCGAGGGACAAATGGAAGCGACAGAAGGATCGACCGCAATTCGTGGAGGTGGAAGATCAGTACGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAGGACGAAGCATTCGAGGAGAGCGAGGAATCTCAAGAGACGATGAAACTGTGCAAGAACCGAGTACGAGGAAGGTACAAATGCGACACGTGCAACAAGGTGTTTCGATCGTACCAAGCGTTGGGGGGCCACCGAGCGAGTCACAAGAAGATCAAAGTGAACGTGAAAGTGGACGGTGGAGAAACGGAAGTAGAGCACAGGAAGAAAAGTGGAACGTGTGGAGTGGAGAAGAAAATCCATGAGTGCCCCGTTTGTTTCAGAGTCTTCGCTTCGGGTCAAGCACTAGGGGGACACAAGAGAACCCATGTTACTGGGTCAGCACCCATAACAGTTCCATCAAGTTCAGCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTTCCTGCTCCGATTGACGAAGACGAGGCTAGCCAAATCGAGAACTCTGCTGTTTCGGATGCAGAATTCGTCAAACCCCGTTAG 1170 0.4949 MDKHKCKLCFRSFSNGRALGGHMRSHMMNLPLSKPDEASPRTIQLSFEAESASSSSSSSSDDDDDDADKALGYGLRENPKRSIRLVDPEFSFAAADTGSAILHDRESESESSKSNPTRKRSKRPWNNNNNNNNNYYYYNYNNNNNNDTNNDTTTSIKKQAFGAEYEALMKKKSKTESWVDHEPASSVSEATTEEDVAFCLMLLSRDKWKRQKDRPQFVEVEDQYEEEEEEEEEEEEEDEAFEESEESQETMKLCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVKVDGGETEVEHRKKSGTCGVEKKIHECPVCFRVFASGQALGGHKRTHVTGSAPITVPSSSAKFGNSFIDLNLPAPIDEDEASQIENSAVSDAEFVKPR* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00673 389 MobiDBLite consensus disorder prediction 211 250 - -
Lapu1g00673 389 MobiDBLite consensus disorder prediction 101 117 - -
Lapu1g00673 389 SUPERFAMILY beta-beta-alpha zinc fingers 261 338 IPR036236 -
Lapu1g00673 389 Pfam C2H2-type zinc finger 4 27 - -
Lapu1g00673 389 Pfam C2H2-type zinc finger 261 286 - -
Lapu1g00673 389 Pfam C2H2-type zinc finger 316 338 - -
Lapu1g00673 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 289 IPR013087 -
Lapu1g00673 389 MobiDBLite consensus disorder prediction 220 245 - -
Lapu1g00673 389 MobiDBLite consensus disorder prediction 20 75 - -
Lapu1g00673 389 Gene3D Classic Zinc Finger 259 338 - -
Lapu1g00673 389 SMART c2h2final6 262 284 IPR013087 -
Lapu1g00673 389 SMART c2h2final6 316 338 IPR013087 -
Lapu1g00673 389 SMART c2h2final6 4 26 IPR013087 -
Lapu1g00673 389 ProSitePatterns Zinc finger C2H2 type domain signature. 264 284 IPR013087 -
Lapu1g00673 389 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lapu1g00673 389 Coils Coil 217 250 - -
Lapu1g00673 389 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 387 IPR044303 GO:0006355
Lapu1g00673 389 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Lapu1g00673 389 ProSitePatterns Zinc finger C2H2 type domain signature. 318 338 IPR013087 -
Lapu1g00673 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lapu1g00673 389 MobiDBLite consensus disorder prediction 101 136 - -
Lapu1g00673 389 MobiDBLite consensus disorder prediction 370 389 - -
Lapu1g00673 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 343 IPR013087 -
Lapu1g00673 389 MobiDBLite consensus disorder prediction 44 58 - -
Lapu1g00673 389 MobiDBLite consensus disorder prediction 121 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00673 Lapu-Chr1 19589151 19590320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00673 1 375 C2H2 Transcription Factor Family AT3G60580 39.895 6.66e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g00673 zf-C2H2_6 3.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00673 - - vra:106780254 596.66