Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00669 ATGAGCCAGTGTGTTCCCAGCTGGGACGTCGACGACCACCCACCGCCCCCAAGGCTCTCTCTTCGCTCCAACTCCACTTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACATGGGAAAATGGGCAGCTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCCCCCCACGAGCGCCGCCAATAAGTACACATGGGAGAAGCCGCGCGCCGGTGGCACCCTGGAGTCCATAGTGAACCAAGCCACGAGCTTGCCGCTCCGTGGAAAGCCAACGCTGAACGGCGACGGCTGCGCGTACGGGAACTTCCTGGTGCCGTGGTTGGACCCTCACGGGAGCGCGGCGACGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAGCGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGCACTTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGGGCGAAGGGACAGGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACGTTCGGGAGGGATAGCAAACACGTGACCCTTGACACGTGCGACAGGGAGTTTGGTGTGGCTTTCACTTCCACCTCTATCAACTCCCTCGACAACACCAGCTCCGCTAAGCACTGCACCAAGACCACCACCGTCGACGACCACGATTCCGTTTCCCACAGCAAACCAGTGGGTGAAGACGGGGACGACGAGAAGAAAAAGAGAGCAAACGGAAAATCGTCGGTGTCTACCAAAAGGAGCAGAGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCCATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAGGTGCAGATGATGAATAGAATCAACATGTCATCGATGATGATGCCATTGACCATGCAACAACAGCTTCAAATGTCTATGATGTCTCCAATGGGAATGGGATTAGGGATGGGAATGGGGATGGGGATGGGGATGGGAATGGGGATGGACATGAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTCCATCCTTCTGCTTTCATGCCGATGGCAGCGTCGTGGGATGCCGCTGCGGCCGGAGGTGGCGACCGGTTTCACGGGAATCCCGCCACCGTGATGCCTGACCCTGTGTCCACATTTTTTGGATGCCAATCACAGCCCATGAGCATGGATGCCTACAGTAGACTTGCTGCCATGTATCAGCAGCTGCACCAACATCCAGTTTCTGCTTCCAAGAACTGA 1365 0.5612 MSQCVPSWDVDDHPPPPRLSLRSNSTSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPPTSAANKYTWEKPRAGGTLESIVNQATSLPLRGKPTLNGDGCAYGNFLVPWLDPHGSAATANTVTMDALVPCSKREQSKQGMESVPSTCMVGCSTRVGSCCGNHGAKGQEMSGRDQSVSGSATFGRDSKHVTLDTCDREFGVAFTSTSINSLDNTSSAKHCTKTTTVDDHDSVSHSKPVGEDGDDEKKKRANGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMMPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMGMDMNSMNRANIPAIPPVLHPSAFMPMAASWDAAAAGGGDRFHGNPATVMPDPVSTFFGCQSQPMSMDAYSRLAAMYQQLHQHPVSASKN* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00669 454 FunFam transcription factor UNE10 isoform X1 261 326 - -
Lapu1g00669 454 SMART finulus 272 321 IPR011598 GO:0046983
Lapu1g00669 454 MobiDBLite consensus disorder prediction 225 283 - -
Lapu1g00669 454 CDD bHLH_AtPIF_like 266 327 IPR047265 -
Lapu1g00669 454 Pfam Helix-loop-helix DNA-binding domain 271 316 IPR011598 GO:0046983
Lapu1g00669 454 Gene3D - 261 327 IPR036638 GO:0046983
Lapu1g00669 454 MobiDBLite consensus disorder prediction 269 283 - -
Lapu1g00669 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Lapu1g00669 454 Coils Coil 272 292 - -
Lapu1g00669 454 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 450 IPR031066 -
Lapu1g00669 454 MobiDBLite consensus disorder prediction 1 31 - -
Lapu1g00669 454 MobiDBLite consensus disorder prediction 226 256 - -
Lapu1g00669 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 328 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00669 Lapu-Chr1 19491878 19497459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00669 1 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 52.144 3.02e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g00669 HLH 6.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00669 - - vra:106780284 721.079