Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00666 ATGTTATTACCAAAAAAGGAAGTAGCAGGATGTGCTTTAGTGAAGATCATGGCCTCTTCTAGCTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCTCCATACTTCCCCCCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCCAGCAACGTGAGCAAACTTCTGAATGAAGTCCAACCCCACCAAAGGGAGGATGCAGTGAACTCTCTGGCCTACGAAGCTGAGGCACGGATAAAAGATCCAGTTTATGGGTGTGTTGGGGCCATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATGCCAACTCAAGATGGGAGAAGAATGGGTGAAGGGGGAGGTTCCTCTCTTGGTCAATCTCCTGGTTATTACTACCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACAGAGGTGACAATAATATGTGA 537 0.46 MLLPKKEVAGCALVKIMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTQDGRRMGEGGGSSLGQSPGYYYPSPWNNDPLGDGYHRGDNNM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00666 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 132 - -
Lapu1g00666 178 Coils Coil 105 125 - -
Lapu1g00666 178 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Lapu1g00666 178 Pfam Lateral organ boundaries (LOB) domain 26 122 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00666 Lapu-Chr1 19437766 19439658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00666 14 129 AS2 family AT3G27650 81.897 1.35e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu1g00666 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00666 - - gmx:100306630 350.517