Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00650 ATGTCACTCATTACCTGCTTCTTGGTCCTGCAATTGTTAACATGGTCAAGGGTGCTTCTTGCTCATGAAAGAAGCCATTGCTCAAGGTCCATTATGAGCATAGGTGCTGTGCTTGATTTGAGTTCAGAAATTGGAAAACATCAGAAGATAGCCATGGAAATTGCAGTCCAAGACTTTAATCGGTTGAGTTGTTCTAAGCTGGTTTTGAAGATGAGAAATTTCAATGGGAATTCAGCTCAAGCAGTTGCTAGTGGTAACACCATGGATCTCGCCCTAAGCAAGCAAGTGCTAGCCATCATTGGTACAATAGCACTCAATGAAGCAACTCTTGCAAGTGAATTTAATGACAAAATAAAAAATATTCCTATCTTGTCTCTAATTTCACCTGTAGCCAGATCAGAGCAAGTATCACCTATGTTGCCATACTTCATCCAAGTGGGATATAATATCAACCTTCACCTGCAATGCATTGCAGCCATTGTAGGAGAATTTAGATGGAGAAAGGTTACAGCAATCTATGAACTTGATAACAGATTTTCCACTGATCCAGGGATGCTACTCAATCTCTCCTATTCTCTTAGACTTGTTGGTTCTGAGATTGACAATCATGTGGCTTTGCCTTCCTTGACCTCTCTATCAGACCCAAATTCTACGATTGAAAATGAGCTTAATAGGCTAAAAAGCAAGACAAACAGGGTCTTCTTGATTGTGCAATCTTCTTTGGAGCTCGCTAACCTACTTTTTGATAAAGCAAAGCAAATGGGTTTAATGGGAAAGGGTTCTGTGTGGATTATCCCAGATGGGATCGCTGGTCGTCTTGATTCAGTTAACTCGTCTGTTATCCTTAACATGCAAGGAGTTATTGGATTTAAGACACACTTCTTGGAAACAAGCAAGGCATTTAGAAGGTTTAAATTCAAATTTCGTAGAAGGTTTATGTTGGAGTTCCCCGAAGAAGAGAACATTAACCCAAGTTCCTTTGCATTTCAATCGTATAAAACAACCTGGGAAGTTGCTCAAGCTGCAAGGGAATCACAAGGGAAGTTAAGCCTAAAACAATTATTAAAAAGTAATATCTCTAGGAATGGAAAATTACGGCAATCACCTACCCTGAATATAATTAACGTGATAGGGAAAAGTTACAGAGAGTTGGCATTATGGTCTCCAGCATTAGGTTTCTCCAAAAGCCTTGTTACAGAACAGCTGACACAGATGAACACAAACAGTGCTTCAAGTGGAGTTTTGAGTACAGTTTATTGGCCTGGAGGTTTACAATTTGTTCCTAAGGGGTGGACTCACAGCATCAAAGAGAGGACATTGCGAATAGGAGTGCCTGCAAAAGGTGCATTTACTGATTTCGTGAATGTTGAATATGATATGATCAGCAATAAAACTTCTATTACCGGATTCTCAATCGATGTCTTTAAAGCAGCTGTTCATAATTTGCGTTATGATTTGAATTTCTCGTTTGTTCCCTTCAATGGATCTTATGATGAAATGGTAGATCTAGTCTACAATAAGACATTGGATGCTGCTGTCGGAGATACATCAATAATGGCGTATAGATATCATTTAGTTGACTTCTCACAACCGTATATTGAATCTGGCATTGACATGGTGGTTACAGAGCAGTCAGCTAAATCAAAGGAAACATGGATTTTTTTAGAAGCCTTCACAGAAGAGATGTGGTTGATGATTGCAGCATTGCACATTTTTGTGGGATTCGTAATATGGTTGATCGAAAGGCAAGTTAATGCAGAACTAAAAGGATTGGGGTCCATGCTTTGGTTCTTAGTCACTGTAATATTCTATGCACATACAGGAGAACAAATTAGAAGCCCCTTGGCTCGAACTGTGCTGGCACCATGGTTATTTGTGATCCTGATTGCAACTAGTACTTTCACAGCAAGTTTGACTTCCATTATGACTGTTTCACAACTAGAGCCATCAGTGTTAGATATCCAGACCCTTCTGAAAAGAAATTCTGTAGTTGGTTGTAATGGAAATTCCTTCATTTGGAAGTATTTGACTGAGGTACACAAATTCAAGCCTGAGAACATTAGGAAAATTAACTCTATAAATGATTACCCTGATGCCTTTCAGAACAAAGATATCGAAGCTGCTTTCTTTATTGCACCTCACGCTAAGGTCTTTTTGGCAAAGTACTCATGCAGAGGTTTAACCAAAGCAGGGAACACTTTCAGGCTTGGTGGCTTAGGTTTTGTATTTCCCAAGGGTTCCACTCTGGCTACTGACATATCCGAAGCACTGCTGACAGTGATAGAGAATGGAGAAACCGAACAACTAGAAAAAGATATGCTAATGGTAGGAGAAAATAGCAGTTGTTCTCCTTTAGAGAGCAAGGCAAAAGATAGGTCATCGACAGGATTTCAACCTTTCCTTGGCCTATTTTGCATCTGTTCTATTGTTGCTATTCTGCTAGTTTGTTGGTTTTCGTTACTGCTGGCTAATGAAACAATGCACCACTGCATAACCACTCCCATCAAGAACATAGGTGCTGTTCTTGATTTGGATTCCCTAATGGGTAAGCAACAGAAAGTAGCCATGGAAATTGCTCTCCAAGACTTCAATACCTTCACTTGTTCAAAGCTGCATTTGAATGTACAGAATTCCAAGGGGATTTCAGCAAGAACAATTGCTACTGGTAATCTAATTCAAGTCTTCAAGCATCAATCCTCTTGGTCAACAATCATAAATAATCATCATATACTCAATGGTGATTTGAGCATGAGATGCCTCATATCTAGGTCAGAAGTTACAGAAACTAATATTAATGTCTGGCACCATAGGCTTGGACACCCATAA 2826 0.3942 MSLITCFLVLQLLTWSRVLLAHERSHCSRSIMSIGAVLDLSSEIGKHQKIAMEIAVQDFNRLSCSKLVLKMRNFNGNSAQAVASGNTMDLALSKQVLAIIGTIALNEATLASEFNDKIKNIPILSLISPVARSEQVSPMLPYFIQVGYNINLHLQCIAAIVGEFRWRKVTAIYELDNRFSTDPGMLLNLSYSLRLVGSEIDNHVALPSLTSLSDPNSTIENELNRLKSKTNRVFLIVQSSLELANLLFDKAKQMGLMGKGSVWIIPDGIAGRLDSVNSSVILNMQGVIGFKTHFLETSKAFRRFKFKFRRRFMLEFPEEENINPSSFAFQSYKTTWEVAQAARESQGKLSLKQLLKSNISRNGKLRQSPTLNIINVIGKSYRELALWSPALGFSKSLVTEQLTQMNTNSASSGVLSTVYWPGGLQFVPKGWTHSIKERTLRIGVPAKGAFTDFVNVEYDMISNKTSITGFSIDVFKAAVHNLRYDLNFSFVPFNGSYDEMVDLVYNKTLDAAVGDTSIMAYRYHLVDFSQPYIESGIDMVVTEQSAKSKETWIFLEAFTEEMWLMIAALHIFVGFVIWLIERQVNAELKGLGSMLWFLVTVIFYAHTGEQIRSPLARTVLAPWLFVILIATSTFTASLTSIMTVSQLEPSVLDIQTLLKRNSVVGCNGNSFIWKYLTEVHKFKPENIRKINSINDYPDAFQNKDIEAAFFIAPHAKVFLAKYSCRGLTKAGNTFRLGGLGFVFPKGSTLATDISEALLTVIENGETEQLEKDMLMVGENSSCSPLESKAKDRSSTGFQPFLGLFCICSIVAILLVCWFSLLLANETMHHCITTPIKNIGAVLDLDSLMGKQQKVAMEIALQDFNTFTCSKLHLNVQNSKGISARTIATGNLIQVFKHQSSWSTIINNHHILNGDLSMRCLISRSEVTETNINVWHHRLGHP* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00650 941 Pfam Bacterial extracellular solute-binding proteins, family 3 461 771 IPR001638 -
Lapu1g00650 941 Pfam Ligand-gated ion channel 772 809 IPR001320 GO:0015276|GO:0016020
Lapu1g00650 941 CDD GluR_Plant 438 774 - -
Lapu1g00650 941 PIRSF IGluLR_plant 1 365 IPR017103 -
Lapu1g00650 941 PIRSF IGluLR_plant 812 899 IPR017103 -
Lapu1g00650 941 PIRSF IGluLR_plant 348 837 IPR017103 -
Lapu1g00650 941 FunFam Glutamate receptor 551 685 - -
Lapu1g00650 941 SMART GluR_14 439 772 IPR001320 GO:0015276|GO:0016020
Lapu1g00650 941 FunFam Glutamate receptor 153 322 - -
Lapu1g00650 941 FunFam Glutamate receptor 435 550 - -
Lapu1g00650 941 Gene3D - 431 551 - -
Lapu1g00650 941 Pfam Receptor family ligand binding region 49 356 IPR001828 -
Lapu1g00650 941 Gene3D - 552 690 - -
Lapu1g00650 941 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 820 IPR015683 -
Lapu1g00650 941 SUPERFAMILY Periplasmic binding protein-like I 28 431 IPR028082 -
Lapu1g00650 941 Gene3D - 155 325 - -
Lapu1g00650 941 SUPERFAMILY Periplasmic binding protein-like II 415 771 - -
Lapu1g00650 941 Gene3D - 29 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00650 Lapu-Chr1 19196604 19225632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00650 30 828 Ion Channels AT2G29100 31.739 1.67e-111 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00650 - - gmx:100778941 1333.93