Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00636 ATGGAGCACAAAAGAATGGCGGTCAATGGAGAACAGAAACGCAGCCCCAGAAACCAAAAGATCCCATTAGCAGATTCCAATGTCCAAACCATGGCGACCCTTTTGACCCCAAGGTTCAAATCTGCAGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCCAGCCTCATCGTTGAAGACACGCCAGATAGAGATTCCAAGCACAAGAAACGCTCTGTTTTGAATTCCAAATCTCCATCCACCAACTCATCAAGAAAACGTAGAGCTCGGAGGACTCCACAACAACCAATCCCTGTAATTCTTGATCTTGATGCAGAAGAAACTCCCAAAAAAGATAGTGGGAGAAAGAAGAAAGAAAAAGGGGCTTGTGTTAATAACGAGGGAAGCAAAGTAGGAGGGGATGAGAATGAATCGAAAGAAAAGAACCCGGGTTCCTCTTCTTCTAGTTCTTCTCTACCCTGCATTGATAAACTTAGGGACGAGCTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCTGCAGACAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCAATGGACGATCATGCACCGTGAACACAGTCCTCTGGAACACAATCCAGCTCCTGTTTCCCCAAGAAATTGAGGCAAGAAAAGCAGCTGGCTCCTTGAATGGTCGTCAACAAGCTCAAAATCTGAGTCCAGAAACAGCATTTTATGCTAACCTAAGGAATACAAGCACACAACCTTCTGGAGGCGGGGCATTGAGCAGAAACATGAATTCAAGAAGGAGTGTGTCAATAACATCATCTACACAGGAGGATGAGGATGCTGCATTGGCTAGAAGGTTACAGAGAGAAATTGATGAACAAAGCCGGGGATCAACTAGAACTCGGGCTCACACTGCAAGATTGAGGCCAAGAAGAGGGGTTTCTACTACTAGCCAACATGAGGATGCAGCTTTGGCTCTAAGGTTGCAGAGAGAAGAGTTCATCCAAACTATTAGGTTACCTTCATCATCATTAGCTAGAGAAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCCTAGGATTAGTGACAGAAGAAGATAA 1146 0.4485 MEHKRMAVNGEQKRSPRNQKIPLADSNVQTMATLLTPRFKSAAAMAGWDEEALLLASLIVEDTPDRDSKHKKRSVLNSKSPSTNSSRKRRARRTPQQPIPVILDLDAEETPKKDSGRKKKEKGACVNNEGSKVGGDENESKEKNPGSSSSSSSLPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAAGSLNGRQQAQNLSPETAFYANLRNTSTQPSGGGALSRNMNSRRSVSITSSTQEDEDAALARRLQREIDEQSRGSTRTRAHTARLRPRRGVSTTSQHEDAALALRLQREEFIQTIRLPSSSLARENLRAMASRAMNPRISDRRR* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00636 381 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
Lapu1g00636 381 MobiDBLite consensus disorder prediction 64 155 - -
Lapu1g00636 381 ProSiteProfiles Zinc finger RING-type profile. 166 205 IPR001841 -
Lapu1g00636 381 SUPERFAMILY RING/U-box 158 229 - -
Lapu1g00636 381 PANTHER UNCHARACTERIZED 332 373 - -
Lapu1g00636 381 Pfam Zinc finger, C3HC4 type (RING finger) 166 204 IPR018957 GO:0046872
Lapu1g00636 381 SMART ring_2 166 204 IPR001841 -
Lapu1g00636 381 MobiDBLite consensus disorder prediction 302 333 - -
Lapu1g00636 381 MobiDBLite consensus disorder prediction 106 126 - -
Lapu1g00636 381 MobiDBLite consensus disorder prediction 1 25 - -
Lapu1g00636 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 235 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00636 102 209 C3H Transcription Factor Family AT2G42030 30.275 8.67e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00636 - - gmx:102666585 530.791