Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00633 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAAGAAGATCATAAGCTCATGAATTTTATCCTCAATAATGGCATTCATTGCTGGAGAACGGTTCCTAAACTAGCAGGTCTTCTAAGATGTGGAAAGAGTTGCAGACTCAGATGGATTAATTATCTGAGGCCAGACCTTAAGAGAGGTGCCTTCACAGAGATGGAAGAGGATCAAATTATAGAACTACATTCACGTCTTGGTAACAGATGGTCTAAGATTGCTTCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCACTGGAATACAAGAATCAAGAAAAGACTCAGTCTCCTTGGTCTGGACCCTGTTACCCACAAGCCAATTGAGTCAAAGGAAAATGCCGTTGAGGGCAAAAGTAAGACCAATTATCCACAGACTTCTATTTCTGGAGGGTCTGAAGGAAATGTGGAGATTAAATCCTTGGAGACTGATGGCACCAAAGCAATCACAAAAACAGAAGGGGAAAGAGAAGAAAACAAGGTGATATGTGATGATACCACTGAACTTTTAAACAATTTTGAAATGCTATGCTCACAGTTGGAGTTGGGATCATGGATGAGTCAAAAAACCAATACTAGTGCTAATTCTTTATGTAGTTCATCTGTCTCTCTGGATGTTTCTATGGATGAATCATCTTACATACAGGAAAACTCCTTAGAGAAATGGGTTGATAGTATGGATTCCATTCTCTCATGGGATGGTTTCAATCCTCTTGATCAAGACATTTTCTTCTCGGAAATAGGGAAT 810 0.3975 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEMEEDQIIELHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLSLLGLDPVTHKPIESKENAVEGKSKTNYPQTSISGGSEGNVEIKSLETDGTKAITKTEGEREENKVICDDTTELLNNFEMLCSQLELGSWMSQKTNTSANSLCSSSVSLDVSMDESSYIQENSLEKWVDSMDSILSWDGFNPLDQDIFFSEIGN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00633 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu1g00633 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu1g00633 270 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 222 - -
Lapu1g00633 270 MobiDBLite consensus disorder prediction 133 156 - -
Lapu1g00633 270 CDD SANT 16 61 IPR001005 -
Lapu1g00633 270 CDD SANT 69 110 IPR001005 -
Lapu1g00633 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu1g00633 270 Gene3D - 68 143 - -
Lapu1g00633 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu1g00633 270 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lapu1g00633 270 SMART sant 13 63 IPR001005 -
Lapu1g00633 270 SMART sant 66 114 IPR001005 -
Lapu1g00633 270 FunFam MYB transcription factor 11 67 - -
Lapu1g00633 270 Gene3D - 11 67 - -
Lapu1g00633 270 FunFam MYB transcription factor 68 129 - -
Lapu1g00633 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu1g00633 270 MobiDBLite consensus disorder prediction 138 156 - -
Lapu1g00633 270 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00633 Lapu-Chr1 18918673 18919712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00633 1 197 MYB Transcription Factor Family AT5G16600 58.128 1.08e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g00633 Myb_DNA-binding 8.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00633 K09422 - gmx:100783231 450.669