Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00596 ATGGGCACAGTAGAAATGATCATTGCATTCCACATGAAGGCTTTGGTCTTTTTTCTTTGGCTGTTTGTCCCCTCATTGGGCAAAGACTTGCTAAGCTGTGAGACAGCTTCACCTGATTCCTCTGGCTACCATTGCATTGAGAATGTGTCACACAACCAATGTGCAACATTTGCACTCTTTCTCACAAACTCCTACTACTCCTCTCTCTCCAACCTAACCTCTTACCTGGGACTCAATAAGTTAGTGGTAGCACAAGCAAATGGATTCTCTGCAGACACTGAGTTCCTCTCCCAAGATCAACCCCTTCTCATACCAATTCATTGCAAATGCAGAGGTGGCTTCTCTCATGCTGAGCTAACCAAAACTACTATCAAAGGAGAGAGCTTCCATGACATTGCTCAATCACTAGAGGGCTTGACAACCTGCAAGGCTATTAGGGACAACAACCCTGGTGTGTCACCTTGGAATCTTGATGACAAACTCAGACTGATTATCCCCTTGAGATGTTCTTGCCCGTTTTCATCTCAAGTTAGACCGCAACCAAAGCTTCTGCTTTCTTATCCTGTAAGTGAAGGTGATACAGTTTCCAATTTGGCCTCCAAGTTCAATATTACTAAAGAAGCTATTGTCTCTGCTAATAACATATCATCACAAGGCCTCTGGGCTAGAAGTGGTCTTGCACCCTTTACCTCTATTCTCATTCCACTTAATGGTAAGCCTACCATTGGTCCTTTGGTTAAACCCAAGGAACCCAATTCTGGCTTTCAAACAACCAGCATCCCTGTAACAAGTTCACACAACAAGTCACCAATGTGGAAGACTGAATTGTTCATTGGCCTAGCTGGGGTTGCACTTGGAGTCTGCATTGCTCTTGCTGCAGCCTTTTTCTTCATCAGACTGAAGCACAAGAAGGGGGAAGAGATTTCATGCAAAGAAGGAGATATGGAGCTGCAACATCTGAATCAAAGTGTGAGAACCACCTCCACTAATGACAAGAAAGTTTCATTTGAGGGATCTCAGGATACTCTTGATGTGAAAATTGTTGATGCCACATCGCGCAAGATGTTGCTGGAGACATACACCATTGAGAATATGAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGATCAGTATATCACGGTCGTCTGAATGGGAAGAACATGGCAATCAAGAGAACAAAGGAAGAAATCGTGTCAAAGATAGATCTTGGCCTTTTCCATGACGCACTTCACCACCACCCCAACATTCTTAGGCTTCTTGGAACAAGCATGTCAGAGGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCACTTAAAGATTGGCTTCATGGTGGATTAGCCATCAAGAACCAATTCATTGCATCTTGCTACTGTTTCCTCACATGGAGCCAAAGGCTCAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTTATGAATCCCTGCTATGTGCATAGAAATGTTAAGAGCAGGAACATCTTTTTGGACGAAGAATTTAGTGCCAAGATAGGGAATTTTGGTATGGCAGGTTGTGTTGAGCATGACACTGAGGATCCACATTTCTATTCCACCAACCCCGCCTCCTGGAGCCTTGGTTATTTGGCACCTGAGTATGTGCACCAAGGTATAATTTCCCCAAGCATTGATATCTTTGCCTATGGGGTGGTTTTGTTAGAGGTTTTATCTGGTCAAACTCCTATAAGCAGGCCCAATGAGAAGGGAGAAGGAAGCATTTGGCTCACAGATAAAATCAAGTCCATTTTGGTGTCTGAAAATGAGAATGAACTAAGGGGGTGGATAGACAGTGCATTAGGGGAGAACTATTCATTCGATGCAGCTGTGACAATGGTCAACATTGCAAGAGCTTGTGTGGAGGAAGATTCTTCCTTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGATTGGTGGAGGAATTACCAGAAGGGGAACAACACATGTTAATGAGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAATCTTGAGTAA 2070 0.4362 MGTVEMIIAFHMKALVFFLWLFVPSLGKDLLSCETASPDSSGYHCIENVSHNQCATFALFLTNSYYSSLSNLTSYLGLNKLVVAQANGFSADTEFLSQDQPLLIPIHCKCRGGFSHAELTKTTIKGESFHDIAQSLEGLTTCKAIRDNNPGVSPWNLDDKLRLIIPLRCSCPFSSQVRPQPKLLLSYPVSEGDTVSNLASKFNITKEAIVSANNISSQGLWARSGLAPFTSILIPLNGKPTIGPLVKPKEPNSGFQTTSIPVTSSHNKSPMWKTELFIGLAGVALGVCIALAAAFFFIRLKHKKGEEISCKEGDMELQHLNQSVRTTSTNDKKVSFEGSQDTLDVKIVDATSRKMLLETYTIENMRKATEDFSSSNHIEGSVYHGRLNGKNMAIKRTKEEIVSKIDLGLFHDALHHHPNILRLLGTSMSEGKEQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVASALQYMHHVMNPCYVHRNVKSRNIFLDEEFSAKIGNFGMAGCVEHDTEDPHFYSTNPASWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIKSILVSENENELRGWIDSALGENYSFDAAVTMVNIARACVEEDSSLRPSAREIVEKLSRLVEELPEGEQHMLMSESSSKPLVKAVENNLE* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00596 689 Gene3D LysM domain 185 235 IPR036779 -
Lapu1g00596 689 ProSiteProfiles LysM domain profile. 185 234 IPR018392 -
Lapu1g00596 689 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 25 663 - -
Lapu1g00596 689 MobiDBLite consensus disorder prediction 667 689 - -
Lapu1g00596 689 SUPERFAMILY Protein kinase-like (PK-like) 355 656 IPR011009 -
Lapu1g00596 689 FunFam PTI1-like tyrosine-protein kinase 3 444 670 - -
Lapu1g00596 689 Pfam LysM domain 187 222 IPR018392 -
Lapu1g00596 689 SMART LysM_2 186 235 IPR018392 -
Lapu1g00596 689 Gene3D Transferase(Phosphotransferase) domain 1 444 678 - -
Lapu1g00596 689 Gene3D Phosphorylase Kinase; domain 1 345 443 - -
Lapu1g00596 689 CDD LysM 186 217 IPR018392 -
Lapu1g00596 689 Pfam Protein kinase domain 380 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00596 689 ProSiteProfiles Protein kinase domain profile. 345 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00596 689 SUPERFAMILY LysM domain 186 222 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00596 Lapu-Chr1 18290158 18292705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00596 34 682 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.708 5.20e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lapu1g00596 Pkinase 3.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00596 - - gmx:100816082 1248.42