Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00571 ATGGCGATGGAAGTGGAGCACAATCAGAATCAGCCATTAGGGTTTCCCTTCTGGAAACCGCTCCGTCGCAGGTTCGGACCCGACTCTCCTTTCTTCGCTCCCGGTAACCTCGAAAGAGAACTTCTTGCCAAACAGGTTGCTTTGGAATTGACAGAAGAGAAGCAACAGCTTGAGAAATGGATGCAAGAGGAAGAAGGAAGGGAAATCTTTTGTCCCATTGTTGGTTGTGGTGCACGCTTGACTTCTATGGATGACTTCGAAAATCACTATAATGCAAGGCATACTGCATCTTGTTCTGTGTGCTCCAGAGTCTACCCAACATCTCGGTTGCTCAGCATACATGTATCTGAAGTGCATGATTCTTTCTTTCAGGCAAAAGTTGCGCGTGGTTACGATATGCTAGTTGGATGTTTGTTGCCTTCTTCTTATGAATGCTTGGTGGAAAGGTGTGGTTTGAAATTCAAAAGCTACAATCGTAGGCATCAGCATCTGGTTGACAAGCATAAATTCCCCGCCTCATTTGAGTTTTTCAAGAAGGCTAAACCTTCAAAGAAGCAGAGATTGAAGTCCCAACACAAACAAGCTGTTCCTAAGGAGGATGCTGCAGGAATGATGGAAGTGGAAAACGCAGCCGTGGATGACCTTGTTTCAGCAGTCTCTAAATTGAGCACTTCTGATTCCACCCCTTCATCTGTCAGCTTTGGTCGCCGCAGCAAAGGCTTGTCATTTGTCCCTCGAACTGTTCTGCGTGGAGATCGATCAAACTCAGCAGCTTCTGGGACAAAGAGATAA 792 0.4609 MAMEVEHNQNQPLGFPFWKPLRRRFGPDSPFFAPGNLERELLAKQVALELTEEKQQLEKWMQEEEGREIFCPIVGCGARLTSMDDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEVHDSFFQAKVARGYDMLVGCLLPSSYECLVERCGLKFKSYNRRHQHLVDKHKFPASFEFFKKAKPSKKQRLKSQHKQAVPKEDAAGMMEVENAAVDDLVSAVSKLSTSDSTPSSVSFGRRSKGLSFVPRTVLRGDRSNSAASGTKR* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00571 263 ProSitePatterns Zinc finger C2H2 type domain signature. 98 119 IPR013087 -
Lapu1g00571 263 ProSitePatterns Zinc finger C2H2 type domain signature. 145 168 IPR013087 -
Lapu1g00571 263 PANTHER UNCHARACTERIZED 13 248 IPR039258 -
Lapu1g00571 263 Coils Coil 43 67 - -
Lapu1g00571 263 SMART c2h2final6 143 168 IPR013087 -
Lapu1g00571 263 SMART c2h2final6 96 119 IPR013087 -
Lapu1g00571 263 SMART c2h2final6 69 94 IPR013087 -
Lapu1g00571 263 ProSitePatterns Zinc finger C2H2 type domain signature. 71 94 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00571 13 259 C2H2 Transcription Factor Family AT5G14140 63.035 4.48e-109 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g00571 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00571 - - gmx:100819557 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00571 1 17973286 17975821 Lapu1g00571 1 17973286 17975821 ECH