Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00564 GCAAATTTTTATTGTGAGTTTTTTTATAACCACCCATACAACGCGCGGGTTAGGCGGTTTAAGTCATATTCAACAAAAAATCTAATAGCGAAACTAATTGTAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTAGGGAGGTCCGTTTGATATCCAAAAACTGCTCGACAACAGTTGGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAAATATAGTGATAATTTGATTTGTTTAAGTCATATTCAA 432 0.4005 ANFYCEFFYNHPYNARVRRFKSYSTKNLIAKLIVKEGKSATLKLPSREVRLISKNCSTTVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGFPALGRRSRKRKKYSDNLICLSHIQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00564 144 MobiDBLite consensus disorder prediction 94 123 - -
Lapu1g00564 144 Pfam Ribosomal Proteins L2, C-terminal domain 29 119 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lapu1g00564 144 PANTHER RIBOSOMAL PROTEIN L2 29 137 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lapu1g00564 144 SUPERFAMILY Translation proteins SH3-like domain 28 138 IPR008991 -
Lapu1g00564 144 Gene3D - 24 64 IPR014722 -
Lapu1g00564 144 SMART Ribosomal_L2_C_2 30 121 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lapu1g00564 144 ProSitePatterns Ribosomal protein L2 signature. 86 97 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lapu1g00564 144 FunFam 50S ribosomal protein L2 64 143 - -
Lapu1g00564 144 Gene3D Ribosomal protein L2, domain 3 65 142 IPR014726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00564 Lapu-Chr1 17881186 17881619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00564 36 103 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 40.260 1.79e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00564 K02886 - gmx:3989337 210.69