Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00560 ATGGATTGGGACGGGAAGGAGTTTGCTTGGGATCCACGTGGGCTGGAGCTGGCTAATGGTGAAGGACAGAGGAATGAAGCTGCTTCTGTGGATTTGAGGCTTGGTGAGGAAAAATCAGTCCCAGATGTTGCTAAGGACCCCAGGGACTCAAAAACTGTGTCTTCACCATCTGGGTCATCAAAAAGATCCCGCCTTCAGAATGGATCACAGAATATGTGTTGTTCTGTCGATGGATGCAACTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGTGAAAAGCACTCCAAAACCCCAGTTGTGCTGGTGGGGGGGAAACAGCAACGGTTCTGCCAGCAATGCAGCAGGTTTCACTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAAAGGCTTGATGGGCATAATAGGCGCAGGAGGAAACCTCAGCCTCCCTCTATTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCATTTTGGCAGCCCGGAGACATATGGCAACCCTATTATGAGGAGTATGTGGTCTGCCACTGCCAAAACTGGAGCTGAATCAGGTTATGATCCACCTCGACTGTTATACAGAATTGACAAGCACAAGCAAGATAAGGGACATCCTCTTTGGCAAGAAAATGACCCTATAGTAGGCAATGGTAATGAAGCAATGCTTGGAACTCCCATTTGTCAGCCTATTCATGGCACCATCACCCCATCAACCGGTGGAAAGAGCAGCCGAAAGCCCTCTTCAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTCGAGTATGGTGCAGTCTAGCATCACCTGTCCAATACAATCTCCATCAGGATCTGTGCATTTTGATGCTGTCAATGAATATGCGTACTCAGAAACGGAAAAAGATAAGCCTAGTGGTCAAGTTTTGGTTCTTGATGCAAACACAACAAACCTTCATTACAACGGAATGCTGCAAATGGGGCTCGACGGGTTGGTCGAAAATGACGATCCACTAACACTTCCCTTCTTGTGGGAGTAG 1095 0.4721 MDWDGKEFAWDPRGLELANGEGQRNEAASVDLRLGEEKSVPDVAKDPRDSKTVSSPSGSSKRSRLQNGSQNMCCSVDGCNSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSIFMAAEKFMYNYKGPRILHFGSPETYGNPIMRSMWSATAKTGAESGYDPPRLLYRIDKHKQDKGHPLWQENDPIVGNGNEAMLGTPICQPIHGTITPSTGGKSSRKPSSDAKPGSFDSGCALYLLSTLQSQSPESSMVQSSITCPIQSPSGSVHFDAVNEYAYSETEKDKPSGQVLVLDANTTNLHYNGMLQMGLDGLVENDDPLTLPFLWE* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00560 364 MobiDBLite consensus disorder prediction 1 69 - -
Lapu1g00560 364 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Lapu1g00560 364 MobiDBLite consensus disorder prediction 244 263 - -
Lapu1g00560 364 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Lapu1g00560 364 Pfam SBP domain 74 147 IPR004333 GO:0003677
Lapu1g00560 364 MobiDBLite consensus disorder prediction 244 266 - -
Lapu1g00560 364 MobiDBLite consensus disorder prediction 30 49 - -
Lapu1g00560 364 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Lapu1g00560 364 MobiDBLite consensus disorder prediction 50 69 - -
Lapu1g00560 364 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 293 IPR044817 GO:0003677
Lapu1g00560 364 FunFam Squamosa promoter-binding-like protein 14 65 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00560 Lapu-Chr1 17791019 17795073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00560 74 172 SBP-box Gene Family AT5G50670 67.677 8.73e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu1g00560 SBP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00560 - - gmx:100798317 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00560 1 17791019 17795073 Lapu1g00560 1 17791019 17795073 ECH