Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00558 ATGACCACCGCTCTAAAGCCACCAATTGGGTTTCGCTTCCTCAAACCGCCGCTGCTTGGTTCCGCATCGTTCAAGTTCCCGACCACTCAGCTTGCAAGAATCAACTGTAGCCACTCCTCTTTTGAAGTTCGAGAGGTTAGCTATCAACCCCCGGGGACTCAGCTTAAACTTCTAAATTCAGTTAGTTTTTCACTTCCAGAGAAAAGTTTTGGTCTAATTTTTGGACAGAGTGGAAGTGGAAAAACAACCCTGTTGCAGCTTCTTGCAGGAATAAGCAAACCAACCTCGGGATCCATTTACATCCAAAAGTATGGGAATGATGGAAATCTTAGTCAAACTACAGAGCCCTTGGTGCCCGAAAGGGTTGGTATTGTTTTCCAGTTTCCTGAGAGGTATTTTGTCGCAGATAATGTGCTTGATGAAGTCACTTTTGGTTGGCCAAGGCAAAAGGATAACCATCAGCTGAGGGAGAATCTTACTCTAGGGCTACAGAGGGCAATTAACTGGGTAGGATTAAGTGGGATATCATTGGATAAAAATCCTCACTCCCTCAGTGGTGGTTACAAACGCCGTCTTGCCTTGGCAATACAATTAGTGCAAACCCCTGATCTATTGATATTGGATGAACCTCTTGCTGGACTTGATTGGAAAGCACGTGCTGATGTTGTGAAGCTTTTGAAGCATTTGAAAAAGGAATTAACTGTGCTAGTTGTTAGCCATGATTTGAGAGAATTTGCAACTCTAGTTGATCGATCATGGAGAATGGAAATGGGTGGCTACCTTAAAGAAGAATTTCTACCCTTCTAA 807 0.4349 MTTALKPPIGFRFLKPPLLGSASFKFPTTQLARINCSHSSFEVREVSYQPPGTQLKLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGISKPTSGSIYIQKYGNDGNLSQTTEPLVPERVGIVFQFPERYFVADNVLDEVTFGWPRQKDNHQLRENLTLGLQRAINWVGLSGISLDKNPHSLSGGYKRRLALAIQLVQTPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLREFATLVDRSWRMEMGGYLKEEFLPF* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00558 268 Gene3D - 28 265 IPR027417 -
Lapu1g00558 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 259 IPR027417 -
Lapu1g00558 268 FunFam ABC transporter I family member 11 chloroplastic 30 266 - -
Lapu1g00558 268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 266 IPR003439 GO:0005524
Lapu1g00558 268 SMART AAA_5 67 259 IPR003593 GO:0016887
Lapu1g00558 268 PANTHER HEAVY METAL TRANSPORTER 42 264 - -
Lapu1g00558 268 Pfam ABC transporter 58 211 IPR003439 GO:0005524
Lapu1g00558 268 CDD ABC_cobalt_CbiO_domain1 42 258 IPR015856 GO:0005524|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00558 Lapu-Chr1 17662217 17695288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00558 42 242 Calmodulin-binding Proteins AT2G36910 26.291 2.75e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00558 - - vun:114196181 481.1