Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00553 ATGGATCCCAAGAGCTCAAAGCAGCCACTGGCACAGGAGGTGGTACCAAACTTTCTTAGCCTCCCCCAACAACAATCACCACCACAGCAGCAGCAACAACAACAAGGTAACAATAACGCCATGGGAGAGAACAAGCCGGCAGAGATGAAGGATTTCCAGATAGTGGTTGCTGAGAAGGATGAAAGCAAGAAGCAGTTGGCTCCAAAGAGGAGTTCGAACAAGGACAGGCACACCAAGGTTGAAGGGAGGGGAAGGAGGATAAGGATGCCTGCTCTGTGTGCAGCTAGAATCTTCCAGTTGACCAGAGAATTGGGTCACAAATCTGATGGGGAAACCATCCAGTGGCTTCTCCAGCAGGCTGAGCCGTCCATAATAGCTGCTACTGGGACAGGTACAATCCCTGCATCTGCTTTGGCTGCTGCTGGCAACTCCGTCTCACCACAAGGGGCCTCTCTATCATCAGGGTTGCACCAAAAGATTGATGAATTGGGAGGGGCCAATATGGGGTCGGGTAGCAGTAGGACCAGTTGGCAAATGGTTGGGGGGAATTTGGGGAGACCCCATGTGGCCACGGGCCTATGGCCCCCCCATGTCAGTGGATTTGGATTTCAGACATCATCTGGTCCATCTAATGCCACCCTAGGCACTGAGAGTTCAAATTACCTGCAAAAGATTGGGTTTCCTGGCTTTGACTTGCCTGCTGCTGCCACCAACATGGGTCACATGAGTTTCACCTCAATTTTGGGTGGTGCGGGTACCCAGCAGATGCCTGGTTTGGAGCTGGGGTTGTCCCAGGATGGCCATATTGGGGTCTTGAATCCACAGGCCTTGAGCCAGATTTATCAGCAGATGGGTCAGGCTAGAGTGCAGCAGCAACAACAACATCAGCAAACTCCTGCAAAGGATGATTCTCAAGGCTCAGGACAGTAG 930 0.5215 MDPKSSKQPLAQEVVPNFLSLPQQQSPPQQQQQQQGNNNAMGENKPAEMKDFQIVVAEKDESKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSVSPQGASLSSGLHQKIDELGGANMGSGSSRTSWQMVGGNLGRPHVATGLWPPHVSGFGFQTSSGPSNATLGTESSNYLQKIGFPGFDLPAAATNMGHMSFTSILGGAGTQQMPGLELGLSQDGHIGVLNPQALSQIYQQMGQARVQQQQQHQQTPAKDDSQGSGQ* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00553 309 MobiDBLite consensus disorder prediction 1 85 - -
Lapu1g00553 309 Pfam TCP family transcription factor 72 158 IPR017887 -
Lapu1g00553 309 MobiDBLite consensus disorder prediction 52 85 - -
Lapu1g00553 309 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Lapu1g00553 309 MobiDBLite consensus disorder prediction 283 309 - -
Lapu1g00553 309 MobiDBLite consensus disorder prediction 10 42 - -
Lapu1g00553 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 289 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00553 Lapu-Chr1 17558344 17562399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00553 1 309 TCP Transcription Factor Family AT3G27010 51.952 2.92e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu1g00553 TCP 8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00553 - - vun:114191990 518.464