Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00546 ATGATCAATTCACTTTGTGGAACCCTCAAGAGTGAGAACAACTCTAGAACCAAACTCCAACCCACTTCTTCAAATGACTCAGTTTTGCAGTCCAAGAAAAATGCCACTCAATCCTCTGGTGATGTTGACCAAACTAGCCTAACCCCACCAAGCTTAAACCTTCCTGCACTAAAATTTGACTTGGATGGAGATGTGGAAGTTCAGTCACCAGATAGTTCAATGTGGGAATCCTTTTTTGCTGACCAATTAGATGCTGATTTCATGATCTCTTCCCCAGTGAGGAACGTCCCCTCCCCTCAACTCTCTTCCTACAATTGCAACTATAACTATGCTCATGGAATGCAAGGCCAGAGTCTCTCAGGGTGTTCCCCACCAAGGTTTTCATCATCCCAGATTGGAGCCTTCAACAGCAGCCACAAAGGGAAAGGACTTAGCCCTCTCCACAGGGTCTTCAACTCACCAAACAATCAGTACATGCAGCATGTTGAAAACCTTTCCCTGCCAGCAATAGAAGAGTTCTTGGAGGACTATCAAGGGTATTCATCAACCAAGGTCTCTTCTGATGTTGCAACTTCATCTGAATGCTTTGACTTGTCCACTCAAATCCCATCATCCATGTTGGATAGCTTGACACTGCCCAATTCCTCAAGGTACCATGGTTCAGTAGATGAAGAATCCTCAGTTCACGGTGGCGGCTCTTCTCAACTGTCCCAGGAGAGTGACATCTATCATCAGATGGGGTCCATGGCTAGTGCATCCCTCTCGCAGGCTCTACAACAAGAACGCTACCAAGAGAAACGGCAAAAGCAGCAAGCACAGCAACAACAACAACAGCGCCAGCAAGAGAATCTGATGGTGCCTATTCCCATAGGAATGGAGCAGGAGCAAGACAGCGGGCTTCAACTGGTGCACCTGCTTCTGGCCTGCGCAGAGGCAGTGGCGAAAGAGGAATACATGCTAGCAAGAAGGTACCTCCACCACCTCAACCGAGTCGTCACTCCCTTAGGCGACTCCATGCAGCGGGTGGCGGCGTGCTTCACCGACTCGCTCAGCGCCAGGCTCAATGCCACCCTCACCCCGAAACCCTCCAAACCCCTCAGCCCCTCAAACTCCATGGAAGTCCTCAAAATCTACCAGATCGTGTACCAGGCCTGCCCCTACGTCAAGTTCGCCCACTTCACCGCCAATCAGGCCATCTTCGAAGCCTTCGAGACTGAAGAGCGCGTCCACGTCATCGACCTGGACATCCTCCAGGGCTACCAGTGGCCCGCCTTCATGCAGGCCCTCGCCGCCCGCCCCGCCACCGCTCCCTTCCTCCGCATTACCGGCGTTGGCCCCTCTCTCGACGCCGTCCGCGAAACAGGCCGCTGCCTTACCGAGCTCGCCCACTCCCTCCGCATCCCCTTCGAATTCCACGCCGTCGGAGAACAGCTCGAGGATCTCAAACCCAACATGCTGCACCGCCGTGTCGGGGAGGCCCTCGCAGTTAACGCAGTCAACCGCCTCCACCGCGTCCCCGGGAACCACCTCGGGAACCTTCTCACCATGATACGCGACCAGGCACCGAACATAGTGACCCTGGTGGAGCAAGAGGCGAGCCACAACGGACCCTACTTTCTGGGACGGTTTCTCGAGGCGTTGCACTACTACTCGGCGATCTTCGACTCACTGGACGCGACGTTTCCGGCGGATTCGGCGCAGCGGGCGAAGGTGGAGCAATACATATTCGCGCCGGAGATACGGAACATCGTGGCGTGCGAGGGGGCGGAGAGGTTCGAGCGGCACGAGAGGCTGGAGAAGTGGCGGAAGATAATGGAGGGGAAGGGGTTCAAGGGGGTGGCGCTGAGTCCGAACGCGGTGACTCAGTCGAAGATATTGCTGGGGTTGTACTCGTGTGAGGGGTATAGGTTGACGGAGGATAAGGGGTGCTTGCTGCTTGGGTGGCAGGATAGGGCCATCGTTGCTGCCTCTGCATGGCGGTGTTGA 1986 0.5504 MINSLCGTLKSENNSRTKLQPTSSNDSVLQSKKNATQSSGDVDQTSLTPPSLNLPALKFDLDGDVEVQSPDSSMWESFFADQLDADFMISSPVRNVPSPQLSSYNCNYNYAHGMQGQSLSGCSPPRFSSSQIGAFNSSHKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGYSSTKVSSDVATSSECFDLSTQIPSSMLDSLTLPNSSRYHGSVDEESSVHGGGSSQLSQESDIYHQMGSMASASLSQALQQERYQEKRQKQQAQQQQQQRQQENLMVPIPIGMEQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNATLTPKPSKPLSPSNSMEVLKIYQIVYQACPYVKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPATAPFLRITGVGPSLDAVRETGRCLTELAHSLRIPFEFHAVGEQLEDLKPNMLHRRVGEALAVNAVNRLHRVPGNHLGNLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAQRAKVEQYIFAPEIRNIVACEGAERFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWRC* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00546 661 Coils Coil 255 283 - -
Lapu1g00546 661 ProSiteProfiles GRAS family profile. 293 660 IPR005202 -
Lapu1g00546 661 MobiDBLite consensus disorder prediction 216 237 - -
Lapu1g00546 661 MobiDBLite consensus disorder prediction 254 280 - -
Lapu1g00546 661 Pfam GRAS domain family 302 660 IPR005202 -
Lapu1g00546 661 MobiDBLite consensus disorder prediction 1 49 - -
Lapu1g00546 661 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 258 655 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00546 Lapu-Chr1 17428802 17431247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00546 228 661 GRAS Transcription Factor Family AT1G66350 40.305 4.22e-101 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu1g00546 GRAS 1.9e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00546 - - gmx:100805039 1101.27