Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00537 ATGGGTAGCTGCCCTTGTTTCGGGTTGAGGAAGAAGAGCCAAGGGAAGAGTGCCAAGGCGCGGGATGAGGAAAACAAGAATCGCAAATCTATAGAGACTAGCAATGATGTCTCTGAAAGTTCTTCAGGAAATGGAGCAGAAGAAAATCCAATAGAGGGCGAAAGTCCTCATAAGGCCCGGATATTTACCTTCCGAGAGCTTGCAACGGCAACGAAAAATTTTAGAGATGAAACCTTTATTGGGCAAGGTGGATTTGGCATTGTTTACAAGGGAATGACTGGGGAAAATCAGGTTGTAGCTGTTAAAAGACTTGATACTACTGGTGTGCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTCTACGCCATTCCAACCTTGTTAGTATGATTGGTTACTGTGCGGAAGGGGATCAACGTCTTCTTGTGTATGAGTACATGGCTTTGGGATCCCTAGAATCTCATCTTCATGATGTTTCTCCTGATGAAGAACCACTTGATTGGAATACCAGAATGATGATAGCTTGTGGGTCAGCAAAAGGACTACATTATCTGCACGATGAAGCAAAACCCTCTGTTATATACAGGGATCTTAAAACATCCAACATACTATTGGATGAAGATTTCCATCCAAAACTTTCTGATTTCGGGCTTGCAAAATTTGGGCCGACCGGAGATCAATCATATGTTGCCACTAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAATATGCCACTAGTGGAAAATTAACAAAGAGATCTGACATTTACAGTTTTGGGGTTGTGTTATTGGAACTAATTACTGGACGCAAAGCATATGATGATAACCGTGGCCCTGAAAAGCATCTGGTAGACTGGGCACGTCCAATGCTTAGAGACAAAAGGAGTTTCCCAAGATTGGTAGATCCACGGCTTCAAGGCAAGTACCCAGGATCTTGTCTACCGATGGTCATTGAATTGACAGCCATGTGTCTTCGTGAAGAGCCACGACAACGGCCTAATGCAGGTGATATAGTGGAAGCTCTGGAATTCTTGTCATCCAAGCCATATGCCCCAAAAGTGTTAAACACAATCAACACAACTGAGATGGAGAGTGGAGATTCCCCAAATGAAACAACAGCGATTTTGCCTAAAGAATCACTGAGAGAGCGAGCTGTTGCAGAAGCCAAGCTGTGGGGGGAGACATGGAGGCAGAGACGACAAAGTGAGCAAAGTCCTACCGAAGCATATAGGTTGTGA 1251 0.4452 MGSCPCFGLRKKSQGKSAKARDEENKNRKSIETSNDVSESSSGNGAEENPIEGESPHKARIFTFRELATATKNFRDETFIGQGGFGIVYKGMTGENQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHSNLVSMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDEEPLDWNTRMMIACGSAKGLHYLHDEAKPSVIYRDLKTSNILLDEDFHPKLSDFGLAKFGPTGDQSYVATRVMGTQGYCAPEYATSGKLTKRSDIYSFGVVLLELITGRKAYDDNRGPEKHLVDWARPMLRDKRSFPRLVDPRLQGKYPGSCLPMVIELTAMCLREEPRQRPNAGDIVEALEFLSSKPYAPKVLNTINTTEMESGDSPNETTAILPKESLRERAVAEAKLWGETWRQRRQSEQSPTEAYRL* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00537 416 ProSiteProfiles Protein kinase domain profile. 74 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00537 416 SMART serkin_6 74 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00537 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Lapu1g00537 416 MobiDBLite consensus disorder prediction 34 48 - -
Lapu1g00537 416 SUPERFAMILY Protein kinase-like (PK-like) 52 349 IPR011009 -
Lapu1g00537 416 CDD STKc_IRAK 80 347 - -
Lapu1g00537 416 PANTHER OS07G0668900 PROTEIN 23 357 - -
Lapu1g00537 416 Pfam Protein kinase domain 75 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00537 416 FunFam probable serine/threonine-protein kinase RLCKVII 46 149 - -
Lapu1g00537 416 Gene3D Phosphorylase Kinase; domain 1 35 149 - -
Lapu1g00537 416 Gene3D Transferase(Phosphotransferase) domain 1 150 365 - -
Lapu1g00537 416 FunFam Serine/threonine-protein kinase PBS1 150 365 - -
Lapu1g00537 416 MobiDBLite consensus disorder prediction 1 55 - -
Lapu1g00537 416 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524
Lapu1g00537 416 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00537 Lapu-Chr1 17245035 17250311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00537 12 401 Glycoside Hydrolase AT3G07070 52.273 1.63e-136 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lapu1g00537 Pkinase 8.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00537 K13430 - gmx:100809298 686.797