Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00532 ATGGCAGACCCAACAGCCATGTATGAGTTCCTCAAGCAGCCCTCAAACGGTGGTGTAAAGAGACCACCACCACCACCACCACCCTCCACCGCCGCCACCACCACCACCACCACCACCGCAGCCACCACACGCACCTTCCAATGCCACTTCTGCCACCGCAAGTTCTACACCTCGCAAGCCCTCGGCGGCCACCAAAACGCCCACAAGCTGGAGCGAGCCGCCGCGAGGAGACAAACCAACGGGCTTCTCCCGCCGCCCCCGCTGCCTCTGGAGCCTGCCATCAAGCCAACCGAGCCCAGGACCAGGCCCATGCTGGAACCGCTGGAGCCCACCACCGGGCTCTTCTTCCACCCTCCCTACTGGCTCGATGTGGAGCCCCTGCAGTTCCAAACCACCCACCCTTACGTGACCGCCGCCACCCTCCCCGTCCCGTTCCACGCCGCGTCTTCCACCGTACCACAACAGCAACAAGTCCTTTCCCACAATGTCGACGCTTCCGACCACGTGAACCTCGACCTCACTCTCCGCTTGTGA 534 0.6367 MADPTAMYEFLKQPSNGGVKRPPPPPPPSTAATTTTTTTAATTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRQTNGLLPPPPLPLEPAIKPTEPRTRPMLEPLEPTTGLFFHPPYWLDVEPLQFQTTHPYVTAATLPVPFHAASSTVPQQQQVLSHNVDASDHVNLDLTLRL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00532 177 Gene3D Classic Zinc Finger 29 82 - -
Lapu1g00532 177 MobiDBLite consensus disorder prediction 1 38 - -
Lapu1g00532 177 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Lapu1g00532 177 MobiDBLite consensus disorder prediction 80 101 - -
Lapu1g00532 177 SUPERFAMILY beta-beta-alpha zinc fingers 43 73 IPR036236 -
Lapu1g00532 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Lapu1g00532 177 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 80 IPR044246 GO:0009788
Lapu1g00532 177 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00532 Lapu-Chr1 17080999 17081532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00532 41 88 C2H2 Transcription Factor Family AT5G14010 66.667 4.84e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g00532 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00532 - - vra:106758350 291.967