Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00527 ATGTTGCCCTGCGATTACTGTCACTCCAAACCCGCTTTACTCTTCTGCCGACCCGACTCCGCCAAACTCTGTCTCCTCTGTGATCAGCACGTGCACGCCGCTAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACACCTGCAACGCCGACACCGCCGCCGTCCGCTGCTCCGCCCACAATCTCCTCCTCTGCCACACATGCGACCTCGACGCTCACGTCCGCGCCCCCGCCTCCCTCCACCACCGCCACCGCCTCCGCGGCCTCTCTGGCTGCCCCTCCGTCCGCGAGATTGCATCAACCCTCGGCCTCGATTTCCCGCCCCGCCACGCCAACTGCCGCGACGAGGTCTACGAGCAACTCCTTGAAGTTGCGCGCAGGAGGAACGAGAACGAGAACGAGTTTACGCGTGCCGAGAGCGTGGAATTCAGGTTCGACTCCGAAAACGACGTTGTCGACGACGAGATGTTGCTGCAGCAGGCGCCGTTCACGTACTTGCTCGGGATGCCCGATTCCCAATCTGAATTTGACGCCGCCAAAACTAACGATAACGGTTACGGAGCCCAATCAGGAGATCTTCTCTGGAGTTTTGAACCCGACTATCAGTCTCCTCAGGTGTGGGATTTTCAATTACAGAAATCAAGAGTGGTGACATTTGATGGTCTAGAAGTTCCAAAATCATTTCAGGATGTGCACAATATGAATTACTCGGTCATTGGTGATGATATTCTATCAAGAAATAACCAATCGGATCAGTCATCGTCAAGCCATGCAAAGAAGAAAGAAGAAAGCAACAAGAAAGCTAGAGGTGGGTTATCATCAGAGTCCAAATTGTTAGAATCCATACCGTGTAGTGCCACCAACAATGTCGTAGTCATGGAGCATCTTGTGGGAGGGAATGAAAATGTTAGCACCTTAAAAGCCAGGGTTAGCTTGGAAGAGTTGGCAAAGAATAGAGGTGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACTCGAAGGTACGATAAGCACATTCGCTATGAATCAAGAAAGGCCAGGGCTGATACTAGAAAGAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCATGA 1107 0.5221 MLPCDYCHSKPALLFCRPDSAKLCLLCDQHVHAANALSLKHVRFQICDTCNADTAAVRCSAHNLLLCHTCDLDAHVRAPASLHHRHRLRGLSGCPSVREIASTLGLDFPPRHANCRDEVYEQLLEVARRRNENENEFTRAESVEFRFDSENDVVDDEMLLQQAPFTYLLGMPDSQSEFDAAKTNDNGYGAQSGDLLWSFEPDYQSPQVWDFQLQKSRVVTFDGLEVPKSFQDVHNMNYSVIGDDILSRNNQSDQSSSSHAKKKEESNKKARGGLSSESKLLESIPCSATNNVVVMEHLVGGNENVSTLKARVSLEELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00527 368 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Lapu1g00527 368 ProSiteProfiles Zinc finger B-box type profile. 42 91 IPR000315 GO:0008270
Lapu1g00527 368 SMART bboxneu5 1 46 IPR000315 GO:0008270
Lapu1g00527 368 MobiDBLite consensus disorder prediction 247 276 - -
Lapu1g00527 368 CDD Bbox1_BBX-like 3 46 - -
Lapu1g00527 368 Pfam CCT motif 321 363 IPR010402 GO:0005515
Lapu1g00527 368 ProSiteProfiles CCT domain profile. 321 363 IPR010402 GO:0005515
Lapu1g00527 368 MobiDBLite consensus disorder prediction 257 272 - -
Lapu1g00527 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00527 Lapu-Chr1 16951342 16954708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00527 1 365 C2C2-CO-like Transcription Factor Family AT2G33500 33.879 6.46e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lapu1g00527 CCT 8.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00527 - - vum:124830018 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00527 1 16951342 16954708 Lapu1g00527 1 16951342 16954708 ECH