Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00521 ATGATGATGGATCAGCGACAGCGAGAGAAACTGCTTCACAAAACCGAGGCCTGTGCTTTCGTGGCAGGTGTTGGTGCCGAGCTTCGACTTGTCGCCGCCCCAGGAGACATCACCAACACCAACAACGTTAGCAGGATCATCAACAGCAGCAGCAACAACGTATCTCAATCTCCCGGGTCGGGTCGGATCCACGACGCTAACCACCTTGGTCTCGTTGCCGCGGTTACCAACCTCGGCACTGTTCACAGGAAGAAGCGGATGCCCAGGCAGCGGCGATCCACCTCCACCCCCACCAACCCCACCTTGTTTATGCAGATGCACCACTTCGACAATCCTTTTCCCTCAACGCAGCACGAGCCTCGTTTTCCGTCAACTTCTTCCGCGTCCTCGCACGTGCCACCCTCCTCTCTCCACTCTGTTAAACCGTCCATTCCTCCCCCGCCCGCACGTAAAGCAGCAGAGACTTTCCTTCCAGCACTGGATTCAAAAGAAGGAATTTTGATCAACATGGATGATAGAGATGGTATTCATGTGTGGAGTTTCAAGTACAGGTTCTGGCCTAACAACAATAGTAGGATGTACGTACTTGAAAATACCGGAGAATTTGTCAGCACACATGGTCTTCGATTTGGCGATACCATTATGGTTTACCAACATGTTGAAAACAATAACTATGTTATTCAGGCTAGGAAAGCTTCGGATGAGGATGAATTTCTTGAACAAAGTAGTGAGATTATGAACGACATCTTCCTGAGTGACTTGGAGGTGAACAAACCTGGTTGTTTCAGTATAACCTATCCTAGAGTGAACGATACTGGCATGTCATTCATATATGACACAACTTTCTCAAATGACTCTCCACTTGACTTTTTGGGTGGATCAATGACCAATCTTTCAAGAATCGGACCAGTTGAAACCTTCGGTTCTGTTGAGAATTTGTCCCTTGATGACTTCTATTAA 960 0.4792 MMMDQRQREKLLHKTEACAFVAGVGAELRLVAAPGDITNTNNVSRIINSSSNNVSQSPGSGRIHDANHLGLVAAVTNLGTVHRKKRMPRQRRSTSTPTNPTLFMQMHHFDNPFPSTQHEPRFPSTSSASSHVPPSSLHSVKPSIPPPPARKAAETFLPALDSKEGILINMDDRDGIHVWSFKYRFWPNNNSRMYVLENTGEFVSTHGLRFGDTIMVYQHVENNNYVIQARKASDEDEFLEQSSEIMNDIFLSDLEVNKPGCFSITYPRVNDTGMSFIYDTTFSNDSPLDFLGGSMTNLSRIGPVETFGSVENLSLDDFY* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00521 319 Pfam B3 DNA binding domain 133 232 IPR003340 GO:0003677
Lapu1g00521 319 MobiDBLite consensus disorder prediction 109 151 - -
Lapu1g00521 319 Gene3D - 147 245 IPR015300 -
Lapu1g00521 319 SUPERFAMILY DNA-binding pseudobarrel domain 150 230 IPR015300 -
Lapu1g00521 319 SMART B3_2 127 233 IPR003340 GO:0003677
Lapu1g00521 319 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 150 242 IPR044800 GO:0003700
Lapu1g00521 319 MobiDBLite consensus disorder prediction 117 137 - -
Lapu1g00521 319 CDD B3_DNA 143 231 IPR003340 GO:0003677
Lapu1g00521 319 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00521 Lapu-Chr1 16817099 16820604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00521 42 319 B3 DNA Binding Superfamily AT3G26790 44.762 3.85e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu1g00521 B3 9.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00521 K09287 - gmx:100783961 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00521 1 16817099 16820604 Lapu1g00521 1 16817099 16820604 ECH