Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00511 ATGGACAACTACATGCTTCCACCACCACCCAGTGAAGAGGACGCGCCACCACCGTCGTGGGGTAGGCCCAATTCACAAGAAGAGGACATTGCCATTGCCTTGGGTGCCCCTCTTACCTTTAAATCCCTGCTTCAACAACAACCTCAACCACAACAACAACAACAACAACAACTTGACTCTTACCTCAACTTCAACATCAACTCTGCTATTTCCATTCCCTTTGTTCCAAACATGGACTCTTTTCCCCCTCTAGACCCCTTTTCACCTTCACTTTCATCACCTCCTTTCTTCAACAACAACAACAGCAACAACAACAACACCAGCATGCCCTTTGACCCGGGCTTTGACTTGGGCCTCGACACTGGGCTTCACTCTTCATGCCCCCCTCTCTTTCCCCAGGTCCACACAGGCTTTGAGTTCGGAGAACTGGAGGCTTTGACTGGACTTGCGAATGTTCCGTTTCTGGACGGAACAAGGGCGGAGAAGCCTCTTGAGGGGATGCAGCCGACCCTTTACAGGAAGAGGAGGGGAACGGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGGGAGGGTGAAGAAGGGAGCAGTGCTGACGTGGATGGTTCAGGGTTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGGGAAGTGAAAATGGTGGAGATAACAAAGGGAAGAGAAAGGGGTTGCCCGCTAAAAATCTCATGGCGGAGAGGCGCCGCAGGAAGAAGCTCAATGACAGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGAGTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTCCATAACGAGCTGGAGACAACTCCGGCGGGCTTGTCGTTGCCATCGTCTACTTCTACGAGCTTTCAGCCTCTAACACCCACCCTGCCAACCCTTCCCTGCCGAGTCAAGGAGGAAGTGTATCCGGGTACCTTGCCAAGCCCTAAGAATCAAGCTGCAAAGGTTGAAGTTAGAGTAAGAGAAGGAAGAGCTGTCAATATTCACATGTTTTGCAGCCGCCGACCAGGCCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTCAACGGCTTTGCTTTAGATGTGTTTAAAGCTGAGCAATGCAGAGAAGGCCAGGATGTCCTTCCTGAGCAAATTAAAGCAGTGCTCTTGGATTCAGCTGGCTTCCATGGTATGATGTGA 1305 0.5027 MDNYMLPPPPSEEDAPPPSWGRPNSQEEDIAIALGAPLTFKSLLQQQPQPQQQQQQQLDSYLNFNINSAISIPFVPNMDSFPPLDPFSPSLSSPPFFNNNNSNNNNTSMPFDPGFDLGLDTGLHSSCPPLFPQVHTGFEFGELEALTGLANVPFLDGTRAEKPLEGMQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEGEEGSSADVDGSGLNYESDENDNGNNGLKGSENGGDNKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELETTPAGLSLPSSTSTSFQPLTPTLPTLPCRVKEEVYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFHGMM* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00511 434 Gene3D - 235 305 IPR036638 GO:0046983
Lapu1g00511 434 MobiDBLite consensus disorder prediction 214 230 - -
Lapu1g00511 434 MobiDBLite consensus disorder prediction 174 252 - -
Lapu1g00511 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 241 290 IPR011598 GO:0046983
Lapu1g00511 434 Coils Coil 280 304 - -
Lapu1g00511 434 SMART finulus 247 296 IPR011598 GO:0046983
Lapu1g00511 434 MobiDBLite consensus disorder prediction 232 252 - -
Lapu1g00511 434 FunFam BHLH transcription factor 237 305 - -
Lapu1g00511 434 MobiDBLite consensus disorder prediction 1 29 - -
Lapu1g00511 434 MobiDBLite consensus disorder prediction 178 200 - -
Lapu1g00511 434 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 82 430 - -
Lapu1g00511 434 CDD ACT_UUR-ACR-like 363 404 - -
Lapu1g00511 434 CDD bHLH_AtAMS_like 244 307 - -
Lapu1g00511 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 314 IPR036638 GO:0046983
Lapu1g00511 434 Pfam Helix-loop-helix DNA-binding domain 248 290 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00511 Lapu-Chr1 16632947 16637127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00511 142 407 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 65.704 7.89e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g00511 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00511 - - vun:114162308 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00511 1 16632947 16637127 Lapu1g00511 1 16632947 16637127 ECH
Lapu1g00511 1 16632947 16637127 Lapu4g01039 4 26461668 26463265 PCT