Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00506 ATGTCCATCTTGCCCTCACAAACCCAAGAGCCATCTTCGTCCTCTTCCTCTGCGCCATCTCCCAACCCTAATCCCCAACATGGCATCGGAATCCCTCTTCCTCAACAGCCCTTCCCTTCTCTCTCACCCCCACTCCACCACGCTCTCGGATCTCTCCAGATCTCCGATAACCCAGGTTCATCGACTCAAGCTGCTGAAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTAGGGTCTCCAAGTGGAGCGATGTTTTCACCTCAGCAAAACTCTAGAACACGTTCTAGGAGTCAAGGCGGAAGACGGGCAGGAATGGTTTCTTCTCATAGAAACCAACAAGCTCCTGGGTCCGTGAATTCTCATGGAAGTACCCCTTTGGCAGGGAGAAAAGCTCAGACTGTGAACGGAAATTACTTGCTGAATTTTCAATATGACCCGATATCCCGTTCTCAACCACGGGGTCCCCCTCCTCCCCCTGCAACAAGAAGGCATTGGAAGAGGAAGCCGTACAATAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTGCTAGATTCCGGAAATTATTCTCCAGAGTCAATGGATCCCGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTTGACCCCCTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCACTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTAATGATGGGTGAAGAGGATCACAAAGGTGATAGCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGACATCTGTCAAGGATTTATATACAGTCCACATCACGAATGTTAAACAGTATCAAGTAGGAGAAAATGTTGAGTTCACCTTTTTAACTCGGAAAAAGGATTCATTTACTCTGTCAAATAAAAATAAGCAAGAGACAAATACCACATCATGTGGTAATGGAGATTTCTGTGATCCCTTTTCTAAGTTTACTCTTACATCAGATGTAGATCTCTCAGTGAGACATTCAATGTCAGATCTAGATGGTTGGCTGGCCAGAGCAGATTCTGGTCTTGTTGATGACCTGGAGAAGCTTCCATATGTTTGTGCTGCAATGCAACAACTGGAACAGAGGAAGAGGTACTGGAATGAGCAAAAGTCTCGTGACAGTGAGAATTCAAAGCTTATTGATCATGGACATCAAATACCATCCATGGCTACAAATACTATGGATACTGATGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCTACTGATTACCATGAACAAATTAAGGTTACGATGCTGGATAAGTCAACTGCTGGAGCCTGTTCATATCAAACTTTGAATGTGGAGAAAGAATTAATAGAACAGCAAATTAATTTATGTTCTTCATATGAGGAGAAGAATATTATTCAAAGGCCTTCAGATGATGGTGTTGTTGAAGAAGTGAAGGGAAATGATTCGTACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAACATGAAGTGTTTGCTGCACCATTATGGGAGCTATGATATGCTTCCACACAGAATAAATGGAAGGATTCTGCAATTGGAGACAGTTACTCAGTCTGAGGCTATGAGGAGGCGTTATCGATTCCTAAGTCATTTTCCGTTAACCACAACATTCCAGCTTTGTGAAGTTGATTTGAGTGAGTTGTTACCTCCTGAAGCACTGACTCCATTTATGGATGAAATAAAGAAACGTGCAAGTCAGAGGAAGCAAGTTGCAAAAAAGGAACGGAAGGAAAAAATAAGGGCTGAAGCTACCGATACCTATTCCCTTCCCGTATCATTAAGTAGTTGGCTTACAACCCGTGATGATCCTCCGACATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAACTGTATCCTCAAGTTCACCGGTGGCTGGGGAGAGGAAATCGTTCTCGAATGTCACAAGACTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTGCAAATTCAAGAAACTAGTGGTCTAAACAATAACAATACGACCATTGATTCTTCTGCCACAACAGGTTCGAGAAACGGGGAGACACAACAGTCATACTCCAATGTTATATCAAGAGCAGAATCAAATATAAGCTCGAATGCACAAAAGACTAAAGAGTTGGGAAAGAAAGGAAAGAAGCCTAATCGAGTTCTTCTGTCAACAGCTGGAGGCAGACGTTATTGA 2235 0.426 MSILPSQTQEPSSSSSSAPSPNPNPQHGIGIPLPQQPFPSLSPPLHHALGSLQISDNPGSSTQAAEDSGGSSEKVTELGSPSGAMFSPQQNSRTRSRSQGGRRAGMVSSHRNQQAPGSVNSHGSTPLAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPPPATRRHWKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDSWKRCPLCFVMTSVKDLYTVHITNVKQYQVGENVEFTFLTRKKDSFTLSNKNKQETNTTSCGNGDFCDPFSKFTLTSDVDLSVRHSMSDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWNEQKSRDSENSKLIDHGHQIPSMATNTMDTDDENCSNGSRTSSTDYHEQIKVTMLDKSTAGACSYQTLNVEKELIEQQINLCSSYEEKNIIQRPSDDGVVEEVKGNDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRINGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSELLPPEALTPFMDEIKKRASQRKQVAKKERKEKIRAEATDTYSLPVSLSSWLTTRDDPPTFSMDDFEALGNSTVSSSSPVAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLNNNNTTIDSSATTGSRNGETQQSYSNVISRAESNISSNAQKTKELGKKGKKPNRVLLSTAGGRRY* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00506 744 MobiDBLite consensus disorder prediction 674 701 - -
Lapu1g00506 744 ProSiteProfiles Zinc finger RING-type profile. 220 266 IPR001841 -
Lapu1g00506 744 MobiDBLite consensus disorder prediction 25 41 - -
Lapu1g00506 744 MobiDBLite consensus disorder prediction 146 167 - -
Lapu1g00506 744 MobiDBLite consensus disorder prediction 1 130 - -
Lapu1g00506 744 MobiDBLite consensus disorder prediction 53 130 - -
Lapu1g00506 744 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Lapu1g00506 744 SMART ring_2 220 266 IPR001841 -
Lapu1g00506 744 FunFam RING finger protein 10 213 281 - -
Lapu1g00506 744 MobiDBLite consensus disorder prediction 1 24 - -
Lapu1g00506 744 Pfam Zinc finger, C3HC4 type (RING finger) 220 266 IPR018957 GO:0046872
Lapu1g00506 744 CDD RING-HC_RNF10 218 275 - -
Lapu1g00506 744 SUPERFAMILY RING/U-box 219 271 - -
Lapu1g00506 744 PANTHER RING FINGER 10 FAMILY MEMBER 55 744 IPR039739 -
Lapu1g00506 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 305 IPR013083 -
Lapu1g00506 744 MobiDBLite consensus disorder prediction 717 744 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00506 47 694 C3H Transcription Factor Family AT3G26730 49.133 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00506 K26979 - gmx:100798764 1197.57