Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00503 ATGGTTGCGCAAGCGCTGGAAGTTGTTGATCAGCATTTAATGGTTTCCACCAGGGTGGAGAAGAGTTCAGAATTGAAAACGCCTGCGACGAATGGCGTTAAAGGAGTTAAGAATTTAAAGAAATCGAAGGCGTCTTCTCCAACTCCGCCGAGGAGGTCGAGTGCTCGAATTCAAGCGCTGCAGAAAGCGGAGCAGGAGGCTCTTGCTGGACGAAATGCGCAGGTAGTTAAGGAAAAAGACAAATGCCAAAGTGAGGTTAAGGGAGGGAAGGGTAAGAAGCGCAGTAGAAAGAGTGGTGGTGAGGAGAGTATGGTGGTGGAAGAAGAGGCTGTTCTGCCGCCAAAGAAGAAGCCCGTGGCGTGCGGCAATGGTGAGGGGGAAGTACACAATGGGAAGGAGGAACCTGACAATGCGGTTGCTGCTTTTGGAGATAAGAGTGACTTGGTTAAAGTTAAAGAGACTATAAGATTGTTCAACAAACATTATCTTCAGTTTGTCCAAGTGGAAGAGAAGAGGTGTGGGAAGGCTGAGTCTGAGCAGAAAGCTGCTAAAAAGCTTTCTAAGAAGGCTTCAAAATCGAAGAAAGGTGCACCAACTGAAGATTCAAAGAACACTGCTAAACGACCAGATCTCAAGGCCATAACCAAGATGATGGAAAATAATGAGATACTGTACTCTGAGAAAAGAATTGGCAGCATTCCTGGTATTGAAGTTGGGTATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGCCATTGGTTAAATGGCATTGATTATATGGGCCAGTCCTATGCCAAAGCGTATAGCTATGAATTTCCAGTTGCTGTTGCTATTGTTTTGTCGGGCATGTATGAGGATGATCTGGATAATGCTGAGGATGTTGTGTACACTGGTCAAGGTGGTCATAATCTGACTGGTGACAAGCGTCAAATCCGCGATCAAAAGTTGGAGCGTGGGAACCTAGCTCTCAAGAATTGTGCAGAGCAATGTGTGCCTGTTAGAGTGATTCGAGGTCATGATTCTTCAAGTAGTTACTCTGGTAAAGTATACACATATGATGGCTTGTACAAGGTTGTCCATTATTGGTCAGAGACAGGGATAGCTGGATTTAAAGTCTTTAAGTTTCGACTTAGGAGGCTTGAAGGGCAACCTACATTAACCACGAATCAGGTATATTTTACTAATGGACGTGTACCTCAATCTATAGCAGAAATACGAGGATTGGTTTGTGAGGATATCACCGGAGGTCAAGAAGATATACCCATTCCGGCTACAAATGTGGTAGATGATCCCCCTGTTCCACCCACAGGTTTCACATATTGTAAGTCTGTTAAGGTAGCAAAAAATGTGAAACTTCCCACTAATGCCACGGGATGCAAGTGCAAAGGCTCCTGTAATGACCCAACAACATGTGCATGTGCTTTGCGTAATGGCTCCGATTTTCCCTATGTATCTCGGAATGGTGGCAGGTTAGTAGAAGCTAAAGATGTAGTATTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTGAACCGAACTTCTCAAAAAGGACTTAGATATCGTCTGGAGGTTTTCCGGACTGCCAAAAAAGGATGGGCTGTCAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGAACGGAAGACATGGACAGCGTGTTGGAAAACAATTATATTTTTGAGATAGATGGCTTGCAAACGATCAAGGGCCTTGGTGGTAGAGAGAGGCGGTCACAAGATGGAGATATTCCTGAAGATATTTTGAACAAATATGATGATCAAAGTTCCGAAAGTGTGCCAGAGTTTTGTATTGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATCTGTTTGTTCAGTGTGTTTTGAGCACACACGATGATTTGAGGTTGGCTCGTGTCATGCTGTTTGCTGCGGACAACATACCACCTATGCAGGAATTAACGTATGATTATGGTTATGCGCTTGATAGCGTGCTGGACTCTAATGGGAAGATCAAGCAAATGCCATGCTATTGTGGAGCCGCAGACTGCAGGAAGCGATTATTCTGA 2118 0.4424 MVAQALEVVDQHLMVSTRVEKSSELKTPATNGVKGVKNLKKSKASSPTPPRRSSARIQALQKAEQEALAGRNAQVVKEKDKCQSEVKGGKGKKRSRKSGGEESMVVEEEAVLPPKKKPVACGNGEGEVHNGKEEPDNAVAAFGDKSDLVKVKETIRLFNKHYLQFVQVEEKRCGKAESEQKAAKKLSKKASKSKKGAPTEDSKNTAKRPDLKAITKMMENNEILYSEKRIGSIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYAKAYSYEFPVAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCAEQCVPVRVIRGHDSSSSYSGKVYTYDGLYKVVHYWSETGIAGFKVFKFRLRRLEGQPTLTTNQVYFTNGRVPQSIAEIRGLVCEDITGGQEDIPIPATNVVDDPPVPPTGFTYCKSVKVAKNVKLPTNATGCKCKGSCNDPTTCACALRNGSDFPYVSRNGGRLVEAKDVVFECGPKCGCGPGCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARTEDMDSVLENNYIFEIDGLQTIKGLGGRERRSQDGDIPEDILNKYDDQSSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHDDLRLARVMLFAADNIPPMQELTYDYGYALDSVLDSNGKIKQMPCYCGAADCRKRLF* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00503 705 MobiDBLite consensus disorder prediction 41 60 - -
Lapu1g00503 705 Gene3D - 213 400 IPR036987 -
Lapu1g00503 705 ProSiteProfiles Post-SET domain profile. 689 705 IPR003616 -
Lapu1g00503 705 SMART G9a_1 226 387 IPR003105 -
Lapu1g00503 705 Gene3D SET domain 409 705 IPR046341 -
Lapu1g00503 705 ProSiteProfiles SET domain profile. 526 675 IPR001214 GO:0005515
Lapu1g00503 705 MobiDBLite consensus disorder prediction 193 210 - -
Lapu1g00503 705 ProSiteProfiles Pre-SET domain profile. 461 523 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu1g00503 705 SMART preset_2 414 510 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu1g00503 705 SUPERFAMILY PUA domain-like 213 405 IPR015947 -
Lapu1g00503 705 Pfam SET domain 537 675 IPR001214 GO:0005515
Lapu1g00503 705 SMART set_7 526 681 IPR001214 GO:0005515
Lapu1g00503 705 SMART PostSET_3 689 705 IPR003616 -
Lapu1g00503 705 MobiDBLite consensus disorder prediction 73 114 - -
Lapu1g00503 705 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 41 698 - -
Lapu1g00503 705 ProSiteProfiles YDG domain profile. 231 383 IPR003105 -
Lapu1g00503 705 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 51 705 IPR025794 GO:0016571
Lapu1g00503 705 Pfam SAD/SRA domain 230 387 IPR003105 -
Lapu1g00503 705 SUPERFAMILY SET domain 411 681 IPR046341 -
Lapu1g00503 705 Pfam Pre-SET motif 418 518 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu1g00503 705 MobiDBLite consensus disorder prediction 179 210 - -
Lapu1g00503 705 MobiDBLite consensus disorder prediction 19 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00503 Lapu-Chr1 16470735 16486628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00503 217 705 EF-hand Containing Proteins AT5G13960 66.937 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu1g00503 SAD_SRA 2.5e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00503 K11420 - gmx:100795584 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00503 1 16470735 16486628 Lapu1g00503 1 16470735 16486628 ECH