Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00485 ATGAACCCGCGAACGACGTCGTCATCGTCGAAGACGAAGAAGAAGCAAACGGCACCAGAGCCGCACCAAACGGCATGGGGAGGGAGGTACCTCGGCGTGCGGCGGAGGCCATGGGGACGGTACGCGGCGGAGATTCGCGACCCTTCCACCAAGGAGCGGCACTGGCTGGGAACCTTCGACACCGCCGATGAGGCCGCACTCGCCTACGACCGAGCCGCACGTGCCATGCGCGGCTCACGTGCTCGCACCAACTTCGTCTACGCCGACACCGCTCCCGGCTCGTCCCTCACCCCCATCATCTCCCCCGACCAACAACAAGCCCTCCCGCAACCCGACCCGGTTCTAACCCTGGACCCGTTTTCCCTCCTCGGGTTTCCCTCCGGTTCTTCCTCCTACGATGAAAATGCCTCCGCCAGCGTGGCAGCTTCCCACTTCAGCCAACAACCGTTTTTCCAAAACAACAACAACAATAATTATTATAATAATAATAATAATAATAATAATAACGATAACAACAACAGTGGGAACACGGTGGAGCTTCCTCCATTGCCACCGGATATTACAAGTTCGATGGGGTACGAGATGGAACAGCAGAGTGATGCCTTCTATTGGGAGGGTAGTCCAATGTTTAGCGCAATGTCAACGGTGTCAGAGAATGTGGGTTGTGAGTCTCAGGTTTTTGAGTTGGGAAGCTCTTCCTTTTTCTTCTGA 711 0.5527 MNPRTTSSSSKTKKKQTAPEPHQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTAPGSSLTPIISPDQQQALPQPDPVLTLDPFSLLGFPSGSSSYDENASASVAASHFSQQPFFQNNNNNNYYNNNNNNNNNDNNNSGNTVELPPLPPDITSSMGYEMEQQSDAFYWEGSPMFSAMSTVSENVGCESQVFELGSSSFFF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00485 236 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lapu1g00485 236 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 158 - -
Lapu1g00485 236 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lapu1g00485 236 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lapu1g00485 236 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Lapu1g00485 236 MobiDBLite consensus disorder prediction 152 179 - -
Lapu1g00485 236 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Lapu1g00485 236 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lapu1g00485 236 MobiDBLite consensus disorder prediction 1 28 - -
Lapu1g00485 236 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Lapu1g00485 236 FunFam Ethylene-responsive transcription factor 2 29 87 - -
Lapu1g00485 236 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Lapu1g00485 236 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00485 Lapu-Chr1 16068850 16069560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00485 7 219 AP2-EREBP Transcription Factor Family AT5G13910 46.875 1.51e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu1g00485 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00485 K09286 - gmx:100792421 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00485 1 16068850 16069560 Lapu1g00485 1 16068850 16069560 ECH