Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00482 ATGAGTTTTCAAGACATCCAAGGCGGGCCCCACCCTCCCTCTCGCCGGAACCAGTCACCGTCGCAGGCCGTCGCTGCCGGCATTTTCCAGATCAACACCGCCGTCGCCACTTTCCGGCGACTCGTTGATGCTGTTGGAACCGTTAAAGACACTGCCGATCACCGTCAGAAGCTGCACAATACGAGGCAGAGGATATTGCAACTGGTGAAGGATACTTCTGCTAAACTCAAATCCTTGAGTGATTCTGATCGTGGTGCTAATTCCAACGCTAGTAAGAAAATTGAAGATGCTAAGCTTGCAAGAGATTTTCAAACGACATTGCAAGAGTTCCAGAAAGTACAACAGCTTGCTTCTGAGCGTGAATCGGCTTACACCCCTGCCGCCTCCTCTTCTTCTTTACCATTAAGCTCTGGCTCTGGTGAAGAATCAATTGGAATAGATGTTGAAAGCCAACCTTTTATTAGAGAGCAGAAGAGGCAAGAGATACTTCTGCTGGATAATGAAATATCATTCAACGAGGCCATGATTGATGAAAGAGAACAGGGAATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTTGCTGTTCTTGTTCATGATCAGGGAGTTGTTATAGATGACATTCAATCAAATATTGATGCTTCTGCTGGTGCAACAACCCAAGCTAGGGTCCAGCTAGCCAAGGCTTCCAAAAGTGTGAAATCGAGAACCTCATGGTGTTGGTGGGTGCTTGTAGTTTTTGTGGTCGTGCTGGTCATATTACTTGTTGTACTCATTCTTTAG 801 0.4582 MSFQDIQGGPHPPSRRNQSPSQAVAAGIFQINTAVATFRRLVDAVGTVKDTADHRQKLHNTRQRILQLVKDTSAKLKSLSDSDRGANSNASKKIEDAKLARDFQTTLQEFQKVQQLASERESAYTPAASSSSLPLSSGSGEESIGIDVESQPFIREQKRQEILLLDNEISFNEAMIDEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIQSNIDASAGATTQARVQLAKASKSVKSRTSWCWWVLVVFVVVLVILLVVLIL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00482 266 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Lapu1g00482 266 Gene3D - 167 266 - -
Lapu1g00482 266 MobiDBLite consensus disorder prediction 1 22 - -
Lapu1g00482 266 MobiDBLite consensus disorder prediction 121 139 - -
Lapu1g00482 266 CDD SNARE_Qa 176 234 - -
Lapu1g00482 266 SUPERFAMILY t-snare proteins 19 228 IPR010989 GO:0016020|GO:0016192
Lapu1g00482 266 MobiDBLite consensus disorder prediction 121 143 - -
Lapu1g00482 266 SMART tSNARE_6 168 235 IPR000727 -
Lapu1g00482 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Lapu1g00482 266 FunFam Syntaxin-22 like 166 266 - -
Lapu1g00482 266 Pfam SNARE domain 210 261 IPR000727 -
Lapu1g00482 266 Gene3D - 13 132 - -
Lapu1g00482 266 FunFam Syntaxin-22 like 15 128 - -
Lapu1g00482 266 SMART SynN_4 8 122 IPR006011 GO:0016020
Lapu1g00482 266 PANTHER SYNTAXIN 22 254 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00482 Lapu-Chr1 15974156 15977018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00482 1 253 SNARE and Associated Proteins AT5G46860 56.809 3.39e-95 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00482 - - gmx:100787141 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00482 1 15974156 15977018 Lapu1g00482 1 15974156 15977018 ECH