Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00454 ATGGGAAGCCCTCAATCCAATTTGCCACCCGGTTTTAGGTTCCACCCAACCGATGAAGAGCTCATTCTTCACTACCTTAGTAAAAAGGTTGCATCCATACCCTTGCCAGTTTCCATCATTGCCGAGGTTGATATCTACAAGTTAGATCCATGGGACTTGCCAGCAAAGGCAACCTTTGGGGAGAAAGAATGGTATTTTTTCAGCCCTAGAGACCGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACAGATAAGACCATAGTAACATCATTGCAAGGTGGAGCAGCACAAGAGAACATTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATACCGCCTTGTAGACAACAACAAACCCATTAAGCTCAAAGACTCCTCCATGAGATTGGATGATTGGGTGTTGTGTCGGATTTACAAGAAGTCCAAACATGCTCTAACCTCAACAGAGGCAGCAGTAGGGGTTGGTGAGGTAGATCAAGCAGAGGAGCACCTATTCAAAGAAACCCTTTTGCCAATCTTAAAATCTCCAACACCTCCTCCTCCTCAGAACACATTGATGTCTCAAAGATCTGTGTCCTTCTCCAACCTGTTGGATGCCATGGACTACTCTGTACTGAGCAGTTTCTTGTCTGAGAATCATTCCAATCCACCAGGGATTGGATCAAGTGCAGGCTTCAACACTCAGAATTTGGAACAACAATCCTCTCCGATCAACAACCCCACCAATAGCTACACGTTTCAGAAGAACAACCAATTGAACCCTTCACTCTCTAACATGGACAACATGAGGCCAAAGCGCCAAGTTTCAAACATTGATGAGGAAACTTTGTATCCATCAAAGAAATACCTGACTTCCTCTTGCAACTTTCCTACCAACGTCAACCCTCAATACGAAAATCCACAATGGAACTACCTCGTCAAACAGTCCTTGCTGAATCAGCGATTACTGCTTGGTCCTCATCTTCAATTTCAAGGATAA 1056 0.4517 MGSPQSNLPPGFRFHPTDEELILHYLSKKVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGAAQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKHALTSTEAAVGVGEVDQAEEHLFKETLLPILKSPTPPPPQNTLMSQRSVSFSNLLDAMDYSVLSSFLSENHSNPPGIGSSAGFNTQNLEQQSSPINNPTNSYTFQKNNQLNPSLSNMDNMRPKRQVSNIDEETLYPSKKYLTSSCNFPTNVNPQYENPQWNYLVKQSLLNQRLLLGPHLQFQG* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00454 351 SUPERFAMILY NAC domain 4 166 IPR036093 GO:0003677|GO:0006355
Lapu1g00454 351 FunFam NAC transcription factor 56 17 171 - -
Lapu1g00454 351 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Lapu1g00454 351 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Lapu1g00454 351 Gene3D NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Lapu1g00454 351 MobiDBLite consensus disorder prediction 245 266 - -
Lapu1g00454 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00454 Lapu-Chr1 15296082 15298530 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00454 4 351 NAC Transcription Factor Family AT3G04070 51.955 8.48e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu1g00454 NAM 4.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00454 - - vun:114194335 674.47