Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00452 ATGGAAGAGCCTATTGTGTTGAACAAAGGTGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTTCACCCGACAGATGAGGAGATAATCACTCATTATCTCACTGAGAAGGTGAAGAATAGTGGTTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAATAAGTGTGAACCTTGGGATTTACCAAAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTATCCAACTGGCATGAGAACCAATAGAGCAACGGAATCTGGGTACTGGAAGGCCACCGGAAAAGATAAGGAAATTTACAAAGGGAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGGGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAGGGCAAATTTGCAAGTTACAACCTTCCTAAGGCAGCAAAGGACGAATGGGTCGTCTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATTCCTGGCCTTTTGAGGATAAACTCTATTGGGGATGATCTTCTTGATTATTCTTCACTCCCACCTCTCATGGAACCTCCTTATGGCAACACCAACACCACTAACCCACTTTCATCAACTAAATCACAATCAGAGGGCTATTATCTTCCCAGTTTCTCCATCAACAACCACCATCAGCTTCTCATCAAGCCAGAAGACCACCACCGAAACTATGAGATTCCCACAATTAGTTACACCTCCAACCAAGCTAATCTCAGCAACAACGTTAACCCAATTGGAAACAGCACGCTCTCACAACCCTCAAACATGTTCTCTGATTACTATGTGCACCAAAACAGGATCAAAAGTTCCATCATGCCAAACTTTGAAGGCTCCGGTTTCGGTAGCAACAACAACATTAACAACCACGATCAAGCCATCCTTAGAGCATTTGCAGCCAAGAACAACGAGCACTTGGGTGGAATATTGGAGAAACAGTGCAAGATGGAACAATTCTCTTCGAACCACTCGCAAGACACTGGCTTAAGCAACGACAGAAACACTGAAACATCCTCGGCGGTTTCAAAGCAAGACAACATGGGAAGAAATAGGGCATTGTACGAGGATCTTGAAGGTCCTTCTTCAGTTGCACCTCTCTCAGATTTGGAGTGCCTGCAGTGGGATGACTACTGA 1197 0.4461 MEEPIVLNKGEEPLDLPPGFRFHPTDEEIITHYLTEKVKNSGFSAIAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPPLMEPPYGNTNTTNPLSSTKSQSEGYYLPSFSINNHHQLLIKPEDHHRNYEIPTISYTSNQANLSNNVNPIGNSTLSQPSNMFSDYYVHQNRIKSSIMPNFEGSGFGSNNNINNHDQAILRAFAAKNNEHLGGILEKQCKMEQFSSNHSQDTGLSNDRNTETSSAVSKQDNMGRNRALYEDLEGPSSVAPLSDLECLQWDDY* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00452 398 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Lapu1g00452 398 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 295 - -
Lapu1g00452 398 FunFam NAC domain-containing protein 100-like 25 171 - -
Lapu1g00452 398 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Lapu1g00452 398 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Lapu1g00452 398 MobiDBLite consensus disorder prediction 339 370 - -
Lapu1g00452 398 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Lapu1g00452 398 MobiDBLite consensus disorder prediction 339 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00452 Lapu-Chr1 15258152 15260803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00452 1 203 NAC Transcription Factor Family AT5G18270 74.528 3.40e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu1g00452 NAM 4.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00452 - - gmx:100784372 698.738