Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00445 ATGAACATGAATATGTGCCAAAATGTATCAGTTTCGGCTGAATGCCACCAAGAGCAGGTCCTTGCCCCTTCTTGCTCGAGCAGCCTTGATGACCTCTTCTCCGCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCAGAGTTTGTTGAAGACTGCTTCTCAAGTCCCCCAAGCTTTGTCTTGGTACCTGCTGGGGTTAAGACTACAAGCACAGGCACAGGTACCAACCCTTCTTCAGGCACATTGAAGAGACCCCAACAAAATGAGTCCCCTTTGCAAAATTTTGCTGTCCCTGGGAAGGCCAGGAGCAAAAGGAAAAGGCTTTCAGCCCCCAGAACCAAGGACCCTTTAAGCATATGGTCACACCATTTGAACCCCCAAAATGAAGCCTTGAGTTCTGACCCTCCTCTACTCAAACAGGCTTATTGGTTGGCTGACAGTGAACTCATTATGCCTAAGCCAAAGGAGGAGCAAGAAGTGACCAAAGTGGATGGAGAAGTTGTGGGGAAGGGGATAGTGATTAACAAGGAAAACTTTGGGGACTCTGACCTTGAAGGTAGCAATGGTCAACAACCAATGCCAAGGAGGTGCACCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTTTGCAATGCATGTGGAGTTAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGTCTGTTTACTCTTCCATCTCTAGTGACCAGTAG 819 0.4847 MNMNMCQNVSVSAECHQEQVLAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSFVLVPAGVKTTSTGTGTNPSSGTLKRPQQNESPLQNFAVPGKARSKRKRLSAPRTKDPLSIWSHHLNPQNEALSSDPPLLKQAYWLADSELIMPKPKEEQEVTKVDGEVVGKGIVINKENFGDSDLEGSNGQQPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSVYSSISSDQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00445 272 Pfam GATA zinc finger 199 233 IPR000679 GO:0006355|GO:0043565
Lapu1g00445 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 257 - -
Lapu1g00445 272 ProSiteProfiles GATA-type zinc finger domain profile. 193 229 IPR000679 GO:0006355|GO:0043565
Lapu1g00445 272 MobiDBLite consensus disorder prediction 71 96 - -
Lapu1g00445 272 CDD ZnF_GATA 198 245 IPR000679 GO:0006355|GO:0043565
Lapu1g00445 272 MobiDBLite consensus disorder prediction 71 122 - -
Lapu1g00445 272 SMART GATA_3 193 247 IPR000679 GO:0006355|GO:0043565
Lapu1g00445 272 Gene3D - 189 261 IPR013088 GO:0006355|GO:0008270
Lapu1g00445 272 PANTHER GATA TRANSCRIPTION FACTOR 22 264 - -
Lapu1g00445 272 ProSitePatterns GATA-type zinc finger domain. 199 224 IPR000679 GO:0006355|GO:0043565
Lapu1g00445 272 FunFam GATA transcription factor 189 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00445 Lapu-Chr1 15135388 15137585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00445 42 261 C2C2-Gata Transcription Factor Family AT4G32890 41.333 1.23e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu1g00445 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00445 - - gmx:100786479 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00445 1 15135388 15137585 Lapu1g00445 1 15135388 15137585 ECH