Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00428 ATGGAAATTCAATTCCAACAACCAAACCTGCAGCATCAGAAATCAGGCATTGCAATCACGAAAAGAGGAAAGTTGAAAGGGAGAAGCAGAAGCAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCTGAGGAAGCAGCCAGAGCCTACGATGAAGCTGCATGCCTTCTTCGCGGATCCAACACTCGCACCAACTTCAACACCCATGTGTCCTTGGATTCCCCACTTGCTTCTCGAATTCGAAATCTTCTTAACAGCAAAAAAGGGATAAAAAAGCAGGAAGATGGTAATGCTAATAATGCACCAGCTCCAAGAGTAAGCAGCATTAGCGGTTCTAGTACTAGCACTACTACTAGTAGTAATAGTACTAGAAATTCAAACAATGGCAATCACAACAATGATAAGTCCCTTTCTACTGTGGCACCTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGACTTTGGGTCAGGTCATCAATCCAATACTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCTATTGCTCAAATATTGGATGTACCAAAGATTGATGATTGCCTCACTGATACAGCTGACTTGCAGCTTTCTGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAGTGAGACTCTCTGGGATCTTCCACCCTTGTGCTCATTGTTCTGCTGA 837 0.4265 MEIQFQQPNLQHQKSGIAITKRGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFNTHVSLDSPLASRIRNLLNSKKGIKKQEDGNANNAPAPRVSSISGSSTSTTTSSNSTRNSNNGNHNNDKSLSTVAPQSSNLFDDAYKPDLSNCREDFGSGHQSNTSWGFGPVFDRFPIAQILDVPKIDDCLTDTADLQLSEFERMKVERQISASLYAINGVQEYMETVQDSSETLWDLPPLCSLFC* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00428 278 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Lapu1g00428 278 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 244 - -
Lapu1g00428 278 MobiDBLite consensus disorder prediction 126 167 - -
Lapu1g00428 278 Gene3D AP2/ERF domain 35 95 IPR036955 GO:0003700|GO:0006355
Lapu1g00428 278 MobiDBLite consensus disorder prediction 114 167 - -
Lapu1g00428 278 CDD AP2 36 95 IPR001471 GO:0003700|GO:0006355
Lapu1g00428 278 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Lapu1g00428 278 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Lapu1g00428 278 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Lapu1g00428 278 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Lapu1g00428 278 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Lapu1g00428 278 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00428 Lapu-Chr1 14795351 14796187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00428 10 278 AP2-EREBP Transcription Factor Family AT5G19790 42.806 1.16e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu1g00428 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00428 K09286 - gmx:100796898 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00428 1 14795351 14796187 Lapu1g00428 1 14795351 14796187 ECH