Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00411 ATGGACAGGCTCATAAAAGTAGACCCGACAAACACTGTCCCGATAAGGATCGAACCAGGCCAGAAATGCCACGGAAAAATCACCTTACGCAATGTTATGTACACCATGCCAGTGGCATTCAGGCTTCAACCGTTGATCAAAACGCGTTACACTGTGAAGCCTCAATCTGGAATCATATCCCCTTTAGCCACAGTAACCATAGAAATCCTCTACCATCTCCCACAAGGGTCCACTCTACCCCATTCCTTCCCTCACTCCGAAGACTCCTTCCTCCTCCACAGCGTGGTGGTTCCTGGCGCCACCATCAAAGAACCCTCCTCCATGATCGAATCCGTCCCCTCCGACTGGTTCACCGCGAAAAAGAAACAAGTGTTCATCGACAGCGGCATCAAGATCATCTTCGTGGGGTCACTCATTCTCGCGCAGCTAGTCCACGACGGGTCCATAGAGGAAATCAGAGAAGCTCTGGAACACAGTGAAGCTTCATGGAAAGCCGTTGACTCCGTTGACTCAAACGGCGACACGCTTCTCCACGTGGCGATTTCCAAAAGCAGACCCGACCTAGTTCAATTACTCCTCGAGTTCAACGCAGACATCGAAGCAAAAGATCGTTCCGGCATGACACCGCTGGAAAAAGCGTGTTCTTTAGGAGAAGAGCTAACCGTTGAGCTTCTGTTAGCTCACAAGGCGATCACAGAGAGAACGGAAACGTCGTCGTTGGGAGCGATTCATTTGTCGGCGAGAGAAGGACACGTCGAGGTTCTGCGGCTCTTGTTACTCAAAGGCGCGAGCGTTGACTCGTTGACCAAAGACGGGGAAACCGCGCTGCACCTTGCAGTTAAACATGGCGAGAGAGATTTCGTAAGGATGTTGCTGGCGAACGACGCGAGAACCGACGTTCGCGATTCACGAGAGGGTGACACGTGTCTGCACGTGGCGGCGGGTGTGGGGGACGAGGAGATGGTGAAGCTGTTGCTGAAGAAAGGGGCGAACAAGGACGTGAGGAACTTCGCGGGTAGGACTGCGTACGACGTGGCGGCGGAGAATGGGCACGCGGGCGTGTTCGACGCGCTGGGGCTGGGGGACGGGCTGTGCGCGGCGGCGAGGAGGGGGGAGGTGAGGAACATCCAGCGGCTGATTGAGGGCGGCGCGGTGGTGAACGGGAGGGACCAGCACGGGTGGACGGCGCTGCACAGGGCGTGTTTCAAGGGGAGGGTGGAGGCTGTTAGGGTTTTGCTGGAGAGAGGGAGTGACGTGGACGCGAGGGATGAGGAGGGGTACAGTGCGCTGCACTGCGCGGTGGAGTCGGGGCATGCTGACGTGGCGGAGGTGCTGGTGAAGAAAGGGGTGGATGTTGAGGCGAGGACTAACAAGGGCGTGACGGCGCTGCAGATCGCGGAGGCGTTGGGTTACGTAGGGATCAGGAGGGTGCTTGTTAGCGGTGGGGCGGAGAAAGAAGAAAAAGATGGGAAAAAGGAGGGAGAGAGAGATTCCGGGGAACTTTGA 1506 0.5657 MDRLIKVDPTNTVPIRIEPGQKCHGKITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEILYHLPQGSTLPHSFPHSEDSFLLHSVVVPGATIKEPSSMIESVPSDWFTAKKKQVFIDSGIKIIFVGSLILAQLVHDGSIEEIREALEHSEASWKAVDSVDSNGDTLLHVAISKSRPDLVQLLLEFNADIEAKDRSGMTPLEKACSLGEELTVELLLAHKAITERTETSSLGAIHLSAREGHVEVLRLLLLKGASVDSLTKDGETALHLAVKHGERDFVRMLLANDARTDVRDSREGDTCLHVAAGVGDEEMVKLLLKKGANKDVRNFAGRTAYDVAAENGHAGVFDALGLGDGLCAAARRGEVRNIQRLIEGGAVVNGRDQHGWTALHRACFKGRVEAVRVLLERGSDVDARDEEGYSALHCAVESGHADVAEVLVKKGVDVEARTNKGVTALQIAEALGYVGIRRVLVSGGAEKEEKDGKKEGERDSGEL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Lapu1g00411 501 Gene3D - 360 495 IPR036770 -
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Lapu1g00411 501 Gene3D - 310 359 IPR036770 -
Lapu1g00411 501 Gene3D - 236 309 IPR036770 -
Lapu1g00411 501 SUPERFAMILY PapD-like 2 149 IPR008962 -
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Lapu1g00411 501 Pfam MSP (Major sperm protein) domain 5 107 IPR000535 -
Lapu1g00411 501 Pfam Ankyrin repeats (many copies) 412 466 IPR002110 GO:0005515
Lapu1g00411 501 PANTHER ROLLING PEBBLES, ISOFORM B 143 230 - -
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat region circular profile. 238 266 - -
Lapu1g00411 501 Pfam Ankyrin repeat 306 336 IPR002110 GO:0005515
Lapu1g00411 501 Gene3D - 134 235 IPR036770 -
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Lapu1g00411 501 Pfam Ankyrin repeats (3 copies) 242 302 IPR002110 GO:0005515
Lapu1g00411 501 Pfam Ankyrin repeats (3 copies) 164 229 IPR002110 GO:0005515
Lapu1g00411 501 MobiDBLite consensus disorder prediction 482 501 - -
Lapu1g00411 501 SUPERFAMILY Ankyrin repeat 166 490 IPR036770 -
Lapu1g00411 501 Gene3D Immunoglobulins 1 125 IPR013783 -
Lapu1g00411 501 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Lapu1g00411 501 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Lapu1g00411 501 PRINTS Ankyrin repeat signature 272 287 IPR002110 GO:0005515
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Lapu1g00411 501 SMART ANK_2a 338 367 IPR002110 GO:0005515
Lapu1g00411 501 SMART ANK_2a 238 267 IPR002110 GO:0005515
Lapu1g00411 501 SMART ANK_2a 205 234 IPR002110 GO:0005515
Lapu1g00411 501 SMART ANK_2a 458 487 IPR002110 GO:0005515
Lapu1g00411 501 SMART ANK_2a 305 334 IPR002110 GO:0005515
Lapu1g00411 501 SMART ANK_2a 172 201 IPR002110 GO:0005515
Lapu1g00411 501 SMART ANK_2a 392 421 IPR002110 GO:0005515
Lapu1g00411 501 SMART ANK_2a 271 302 IPR002110 GO:0005515
Lapu1g00411 501 SMART ANK_2a 425 454 IPR002110 GO:0005515
Lapu1g00411 501 ProSiteProfiles Ankyrin repeat profile. 458 490 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00411 Lapu-Chr1 14429919 14431502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00411 242 480 Miscellaneous Gene Families AT2G31820 30.800 1.20e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00411 - - gmx:100782232 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00411 1 14429919 14431502 Lapu4g01196 4 28630261 28631939 PCT