Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00406 ATGCCCGAAGAAACGACGTCGATTGACTACGTCATGGAGGCCGCATCGGGGGCCCACTTCTCCGGCCTCAGACTCGACGGCCTCCTACCTTCCTCCGCCACCGCCTCCGCCACTCCCGATTCAACCCTAGCATCGGATTCCCTCCCAAATCAGCCTTTCGTTATAGGAGTTTCCGGTGGTACTGCTTCCGGAAAAACCACTGTATGCGACATGATCATTCAGCAGCTTCACGATCACCGCGTCGTCCTCGTCAATCAGGACTCGTTTTATCGCGGGCTGAGACCCGAAGAGTTGGAACGTGTTCATGAATATAATTTCGATCACCCAGAGGCTTTTGACACCGAGCAGTTGTTAGAGTGCATGGGGAAACTCATCAGTGGCCAGGGCGTGCATGTTCCTATTTATGACTTCAAGAAACATCAGCGTTCTTCCGATAGTTTTCGCCAGGTTAATGCCTCTGATGTGATTATATTGGAGGGGATTCTTGTATTCCATGATCAGCATGTGCGGGATCTGATGAACATGAAGATCTTTGTAGACACAGATGCTGATGTGAGGCTTGCTCGCAGAATTAGACGTGACACAGTAGAGAGGGGTAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATCATTCCTCGAGGAGGTGATAATCATGTAGCCATTGATTTGATTGTGCAACATATCCGTACGAAGCTTGGTCAACATGATCTATGCAAAATATATCCTAATGTCTATGTTATTCAGTCTACGTTCCAGATAAGAGGGATGCATACATTGATTCGGGACCGAGACATATCAAAGCATGATTTTGTGTTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGACATCTGCCTTTCACTGAAAAGCAAGTGATTACTCCCACAGGATCTGTCTACACTGGTGTTGATTTCTGCAAAAAGTTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAACGCACTTCGTGCATGTTGTAAAGGCATTAAAATTGGTAAAATTCTGATTCACCGGGATGGAGACAACGGAAAACAGCTTATATATGAAAAGCTTCCCAAGGATATTTCAGAACGGCATGTTTTGCTTCTTGACCCGGTCCTGGCCACAGGAAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAACCACATTATATTCCTGAATCTCATTTCTGCTCCTGAGGGAATCCATTGCGTGTGTAAAAGATTTCCGTCATTGAAGATTGTCACATCGGAGATTGATGTTGCATTAAATGAAGAGTACCGTGTTATTCCAGGTTTAGGTGAATTTGGTGATCGCTACTTTGGCACCGATGATTGA 1422 0.4466 MPEETTSIDYVMEAASGAHFSGLRLDGLLPSSATASATPDSTLASDSLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLRPEELERVHEYNFDHPEAFDTEQLLECMGKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQHVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPENHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEYRVIPGLGEFGDRYFGTDD* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00406 473 Pfam Phosphoribulokinase / Uridine kinase family 54 240 IPR006083 GO:0005524|GO:0016301
Lapu1g00406 473 Pfam Uracil phosphoribosyltransferase 270 471 - -
Lapu1g00406 473 PRINTS Uridine kinase signature 82 93 - -
Lapu1g00406 473 PRINTS Uridine kinase signature 220 233 - -
Lapu1g00406 473 PRINTS Uridine kinase signature 184 194 - -
Lapu1g00406 473 PRINTS Uridine kinase signature 198 209 - -
Lapu1g00406 473 PRINTS Uridine kinase signature 127 142 - -
Lapu1g00406 473 PRINTS Uridine kinase signature 52 69 - -
Lapu1g00406 473 Gene3D - 49 255 IPR027417 -
Lapu1g00406 473 Gene3D - 256 471 IPR029057 -
Lapu1g00406 473 CDD UMPK 54 252 IPR000764 -
Lapu1g00406 473 PANTHER URIDINE KINASE 49 382 - -
Lapu1g00406 473 FunFam Uridine kinase 256 471 - -
Lapu1g00406 473 SUPERFAMILY PRTase-like 255 472 IPR029057 -
Lapu1g00406 473 NCBIfam uridine kinase 52 252 IPR000764 -
Lapu1g00406 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 245 IPR027417 -
Lapu1g00406 473 FunFam Uridine kinase 49 255 - -
Lapu1g00406 473 CDD PRTases_typeI 329 444 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00406 Lapu-Chr1 14338414 14345012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00406 1 473 PRT Gene Family AT5G40870 85.300 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00406 K00876 - gmx:100780005 899.427