Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00400 ATGAGTGCCCATCAACCAAAAGAAGTTAATGAAGGAACTTCCACCAGAGTAAATGAGCATGGAGGCAAGGTCTCAAAGCGTGTTAGGTCACGAGCATCGTCTCCTCCATGTGCGGCATGTAAGAAAATGAGGAAAAGGTGTAGCAACGACTGCATCTTTGCACCTTATTTTGGTTCTACCCAGGGCTCAACACGGTTTGCAGCAGTACATAAGGTGTTTGGTGCAAACAATTTGTCAAAACTATTATTGGAAGTTGAAGCAATTCATCGCAAAGATGCGATAAATTCCATGTGCTACGAGGCTCAGGCGAGGCTAGACAATCCTGTTTATGGTTGTGTCTCTACCATTTCTGCTTTGCAACAACAGGTGGCATCGTTGCAAGAAGAGCTTGCTATGGTTCAAAATCAGTTGATTAATACAAAAAATTTTTATGAAAATCTTCTTCAAAGAACACATCAATACCAACAACAATCAAACATAAATGTAGCTATGCAGCCTACACAGTCTAATAATTTGCCTCCTTCTGCTAACAACTTGATGAACATGAGCTTCTTCAACCCTGGTTTTGATCACCTTGCAATGCAAACAACACCCTCAACACACAACATGGATCCTCTTCAATTCTCTGGGCTTCCCCATTTCAACAATGACATATCACATCTCTTTCCATAA 672 0.4107 MSAHQPKEVNEGTSTRVNEHGGKVSKRVRSRASSPPCAACKKMRKRCSNDCIFAPYFGSTQGSTRFAAVHKVFGANNLSKLLLEVEAIHRKDAINSMCYEAQARLDNPVYGCVSTISALQQQVASLQEELAMVQNQLINTKNFYENLLQRTHQYQQQSNINVAMQPTQSNNLPPSANNLMNMSFFNPGFDHLAMQTTPSTHNMDPLQFSGLPHFNNDISHLFP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00400 223 PANTHER LOB DOMAIN CONTAINING PROTEIN 34 172 - -
Lapu1g00400 223 Pfam Lateral organ boundaries (LOB) domain 36 134 IPR004883 -
Lapu1g00400 223 Coils Coil 116 136 - -
Lapu1g00400 223 ProSiteProfiles LOB domain profile. 35 137 IPR004883 -
Lapu1g00400 223 MobiDBLite consensus disorder prediction 1 30 - -
Lapu1g00400 223 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00400 Lapu-Chr1 14202943 14205060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00400 36 141 AS2 family AT3G03760 66.038 4.48e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu1g00400 LOB 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00400 - - pvu:PHAVU_001G115200g 360.918