Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00395 ATGGAGATGGATCCTCCACCCAAGAGCTGGAGCATCCATACCCGATCCGAAATCATCGCCAAGTATGAGGTCATGGAGCGGGTCGGGTCGGGAGCTTACGCCGACGTATACCGCGGTCGTCGCCTCTCTGACAACCTCATTGTCGCCCTCAAGGAAATCCACGACTACCAATCCGCGTTCCGAGAAATCGATGCGTTGCAGCTCCTCCAGGGATTCCCAAACGTCATCGTTTTGCATGAGTACTTCTGGCGTGATGATGAGGACGCCGTTCTCGTCCTTGAGTTCCTCAGAACCGACTTGGCCACCGTCATCGCTAACGCTGCCAAGGACAACCAGCCCCTCCCTATCGGCCAGCTCAAACGCTGGATGATCCAGATTCTCTCTGGTGTCGACGTTTGTCACCGCAACATGGTCCTCCACCGTGATTTGAAGCCATCTAATCTTTTAATTTCTGAAAATGGCCTCCTCAAGATCGCCGATTTTGGACAGGCAAGAATTCTCACCGAGCCTGGATTTGATGCTTCTAATAATCATGATGAATATTCTAGAGTTTTAGATGGCATCGATAATAAGGATACTAGTACTAATAATACTCACGCTGGAAATGAAACATGCACTACAAGTGACATAAACAGGGAAGAGGAAGAGAGGGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCTAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCAGAGCTTTTAACTCTACGTCCTTTGTTTCCTGGAGCTGCTGATATTGACCAGCTCAGTAGAATCATTGGTGTTTTGGGCAACCTTGATGCGAGTGTTTGGGTTGGTTGTTCCAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTATTGAAGCCTGTTTACCTAATAGGTGCCCTGATGAAGTGGCTATGGTGAAAAGATTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCAATGGAGTTGCTTCATGACAAGTACTTTAATGAAGAGCCTCTTCCTGTGCCTGTTTCTGAGCTGCGAGTTCCTCTTAACAGAAAAGGGCAAAATGAAGATTCTCCTGGTGGATGGGGTGATTTGGATGAAATGGAATCTGATTCTGATTTTGATGACTTTGGCCCTCTCAATATCACAAAAACTAACACCGGTTTCTCCATACAGTTTCCTTGA 1239 0.4689 MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDNLIVALKEIHDYQSAFREIDALQLLQGFPNVIVLHEYFWRDDEDAVLVLEFLRTDLATVIANAAKDNQPLPIGQLKRWMIQILSGVDVCHRNMVLHRDLKPSNLLISENGLLKIADFGQARILTEPGFDASNNHDEYSRVLDGIDNKDTSTNNTHAGNETCTTSDINREEEERELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLRPLFPGAADIDQLSRIIGVLGNLDASVWVGCSKLPDYGIISFSKVENPAGIEACLPNRCPDEVAMVKRLVCYDPAKRATAMELLHDKYFNEEPLPVPVSELRVPLNRKGQNEDSPGGWGDLDEMESDSDFDDFGPLNITKTNTGFSIQFP* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00395 412 Gene3D Transferase(Phosphotransferase) domain 1 109 354 - -
Lapu1g00395 412 SMART serkin_6 22 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00395 412 ProSiteProfiles Protein kinase domain profile. 22 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00395 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lapu1g00395 412 FunFam Cyclin-dependent kinase F-1 13 107 - -
Lapu1g00395 412 Pfam Protein kinase domain 22 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00395 412 Pfam Protein kinase domain 215 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g00395 412 PANTHER CELL DIVISION PROTEIN KINASE 21 357 - -
Lapu1g00395 412 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Lapu1g00395 412 SUPERFAMILY Protein kinase-like (PK-like) 15 357 IPR011009 -
Lapu1g00395 412 MobiDBLite consensus disorder prediction 367 387 - -
Lapu1g00395 412 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00395 Lapu-Chr1 14117232 14128653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00395 6 412 Core Cell Cycle Gene Families AT4G28980 55.789 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Lapu1g00395 Pkinase 5.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00395 - - vum:124837370 756.903