Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00394 ATGGTGATTTATAAGCTGATAGGAGGTGGTAGGAGAATTGTGGAATCTCGCAGCAGTTCTCAATCGGTGACAGAGACAGTATACGGGTCTCACATGTTCGAGATAAAGGGTTACTCTTTGACGAAGGGAATGGGAACAGGGAAATACATTGCAAGCAAAAAGTTCAGCATAGGAGGGTACGAATGGGTTATACACTTCTACCCTGATGGCAAACACTCCAAAGATAACTCCTCTTATGTCTCTCTCTTCATCAGACTCTTTTCCATGGCCACTCATGTTGCCACCTTTTTTGAACTCGACTTGCTCGATCAGAGAGCAAAACGGAAGCGCAATGTTGGGAGTCACTTCGATCACTCCCTCCAAAATGGACCCTGCATTTTCAAAAGATGTGGCAGCATGTGGGGTTATAACCGGTTTTACAAACGAAAAGATCTTGAGGCTTCACCTTTTCTCAAGGATGATTGTTTGAAGATTAACTGCACTATTGGTGTTGTGGTGACTTCATACAGTGATTCTTCAAAGTTAAACACAATACAAGTTCCTGAGTCTGATATGGGGGGGAATTTCGGGTTGCTGTTAGATACTGGGGCATTTTCCGATGTTACTTTCTCAGTTGGTGGAGAAAAGTTTCATGCTCATAAGCTTGTCTTGGCTGCAAGGTCAAAAGTGTTTCTAACTGAGTTTTTTAATGGGGTGGAGAAGGATGAACATGGTGACATAGTTGTTGATGACATTGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACTCTCTAATACAAGATGAAGAGCTTTATATGTCACGTTCATCTCTCTTGCCTTCGCTATCTGAAACATTTCCTGCAAAGCTGTTAGCAGCTGCAGAAAAGTTTGATTTATCAAGACTTAAGCTGATGTGTGAATCTGTACTATGCAAAGATATATCTATAGATTCTGTTGTCAATATTTTTCTTCTTGCTGATCGTAATCATGCAACAGAATTGAAGTTCATGTGTCTAAAATTTGCTGCTCAAAACCTTAATGCTGTGATGCAATCTGACGGTTTCAAGTATCTTAATCAAAATTATCCATCGTTACAAGAAGAACTGCTAAAGACTTTGGTTGAATCCCAGGAGCCATTTATTGGAAAACGAAAATATAAATTTGTGAAGACCCAATCTTCAGCAGATGATCATAAAGGGGATAGCAGTGTAAGACAGCAATCTTAA 1218 0.3974 MVIYKLIGGGRRIVESRSSSQSVTETVYGSHMFEIKGYSLTKGMGTGKYIASKKFSIGGYEWVIHFYPDGKHSKDNSSYVSLFIRLFSMATHVATFFELDLLDQRAKRKRNVGSHFDHSLQNGPCIFKRCGSMWGYNRFYKRKDLEASPFLKDDCLKINCTIGVVVTSYSDSSKLNTIQVPESDMGGNFGLLLDTGAFSDVTFSVGGEKFHAHKLVLAARSKVFLTEFFNGVEKDEHGDIVVDDIEPKVFKALLHFIYRDSLIQDEELYMSRSSLLPSLSETFPAKLLAAAEKFDLSRLKLMCESVLCKDISIDSVVNIFLLADRNHATELKFMCLKFAAQNLNAVMQSDGFKYLNQNYPSLQEELLKTLVESQEPFIGKRKYKFVKTQSSADDHKGDSSVRQQS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00394 405 Gene3D - 310 388 - -
Lapu1g00394 405 Pfam BTB/POZ domain 192 309 IPR000210 GO:0005515
Lapu1g00394 405 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 19 366 IPR045005 GO:0016567
Lapu1g00394 405 CDD MATH 29 162 IPR002083 GO:0005515
Lapu1g00394 405 ProSiteProfiles BTB domain profile. 199 266 IPR000210 GO:0005515
Lapu1g00394 405 CDD BACK_AtBPM-like 308 369 IPR034090 -
Lapu1g00394 405 SUPERFAMILY POZ domain 178 309 IPR011333 -
Lapu1g00394 405 SUPERFAMILY TRAF domain-like 26 166 - -
Lapu1g00394 405 CDD BTB_POZ_BPM_plant 185 308 - -
Lapu1g00394 405 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 27 166 IPR008974 GO:0005515
Lapu1g00394 405 Gene3D Potassium Channel Kv1.1; Chain A 175 305 IPR011333 -
Lapu1g00394 405 SMART BTB_4 199 311 IPR000210 GO:0005515
Lapu1g00394 405 FunFam BTB-POZ and math domain 1 175 305 - -
Lapu1g00394 405 ProSiteProfiles MATH/TRAF domain profile. 28 162 IPR002083 GO:0005515
Lapu1g00394 405 MobiDBLite consensus disorder prediction 386 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00394 Lapu-Chr1 14108285 14111105 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu1g00394 BTB 3.8e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00394 K10523 - gmx:100818306 516.153