Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00393 ATGGCGAGGATGAAGAGCACGCCGCCTATAGGAAGAGTGAGAGGGATGATAAAGGGTTTACATGAGTTCAAAGTGAAGGGATATTCTCTCGTGAAGGGAATTGGAGTGGGAAAATTTATTGCAAGTGAGAAGTTCAATGTTGGAGGGTATGACTGGGTTATATACTTCTACCCTGACGGAAAAGACTCCCGAGAACACGCTGCTGTTTATGTCTCGATTTTCGTTATGCTTCTTTCCAATGCTAAGAATGTTCATGCGATGTTTGAATTGGCCATGCATGACCAAAGAGGACAAGGCCAAGACTATGTCCTTGGTCACTTCAATGACTCCCTAGAAACTGACTCTCGCGTCTTATCAGGCGGCCAAATGTGGGGGATTAAGTGTTTTTATAAACGTTTACACCTGGAACATTCAGCGTACCTCTTAGATGATTGCCTACAAATAGATTGCACTATTGGGGTTTCTCCCATCACCATTGATAATTCCATGATAATAATGGTTCCTGAGTCTACTATGACAAGTAATTTTGAGATGATGTTTCAAGATAAACAATCATCTGATGTTACCTTTTGTGTTAGAGGAAACAAGTTTTATGCTCATAAGATTGTATTGGCGGCTAGATCAACTGTGTTTAAAACTCAGCTTTTCACTGGAACTGAGAAGGTTGATGGAGAGATACTTGTTAATGACATGGAGCCTAAGATTTTCAAGGCATTGCTTTACTTTATTTATAACGACACTCTTACAACAGAACTTTATTTATCAGTGCCACCATCCATGTCTTCTCCGTCACAAACAAATGCAGCAAAGTTGCTAGTTGCTGCACACAAGTACGATTTACCAAGGCTGAAACTGATGTGCCAATCAATTCTTTGCCATCAAGTTTCTATAGATACTGTTGCTGAAATTCTGGTTCTTTCTGATTGTTGTGATGCCAACGAATTGAAGTCCTTATGTCTGCAATTTTCAACAAAACACCTTAAGAATGTGGTGAAAACTGCTGGTTTCGAGCATATTAAGAAAAATCGAACTCTTCAATTTGAACTGCTAAAGACTATAGCAGCAGGAGTTGAGTGTGCCAAATCTTGTGATGATGTTGACACTGATGGAACACATGAGCCAAATGAAATAGAAGCTGAAACACATGAGCCAAATGAAATAGAAGCTGAAAGCACAAGTTATAATCCTTCCAGTGATGAGGAAAACCATATGCAGGGTTAG 1221 0.3972 MARMKSTPPIGRVRGMIKGLHEFKVKGYSLVKGIGVGKFIASEKFNVGGYDWVIYFYPDGKDSREHAAVYVSIFVMLLSNAKNVHAMFELAMHDQRGQGQDYVLGHFNDSLETDSRVLSGGQMWGIKCFYKRLHLEHSAYLLDDCLQIDCTIGVSPITIDNSMIIMVPESTMTSNFEMMFQDKQSSDVTFCVRGNKFYAHKIVLAARSTVFKTQLFTGTEKVDGEILVNDMEPKIFKALLYFIYNDTLTTELYLSVPPSMSSPSQTNAAKLLVAAHKYDLPRLKLMCQSILCHQVSIDTVAEILVLSDCCDANELKSLCLQFSTKHLKNVVKTAGFEHIKKNRTLQFELLKTIAAGVECAKSCDDVDTDGTHEPNEIEAETHEPNEIEAESTSYNPSSDEENHMQG* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00393 406 ProSiteProfiles MATH/TRAF domain profile. 18 152 IPR002083 GO:0005515
Lapu1g00393 406 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 17 155 IPR008974 GO:0005515
Lapu1g00393 406 SMART BTB_4 186 295 IPR000210 GO:0005515
Lapu1g00393 406 Gene3D Potassium Channel Kv1.1; Chain A 161 289 IPR011333 -
Lapu1g00393 406 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 13 345 IPR045005 GO:0016567
Lapu1g00393 406 MobiDBLite consensus disorder prediction 367 387 - -
Lapu1g00393 406 SUPERFAMILY POZ domain 167 293 IPR011333 -
Lapu1g00393 406 MobiDBLite consensus disorder prediction 388 406 - -
Lapu1g00393 406 SUPERFAMILY TRAF domain-like 16 155 - -
Lapu1g00393 406 ProSiteProfiles BTB domain profile. 186 252 IPR000210 GO:0005515
Lapu1g00393 406 Pfam BTB/POZ domain 177 294 IPR000210 GO:0005515
Lapu1g00393 406 CDD MATH 21 152 IPR002083 GO:0005515
Lapu1g00393 406 Gene3D - 294 363 - -
Lapu1g00393 406 MobiDBLite consensus disorder prediction 367 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00393 Lapu-Chr1 14083807 14085296 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu1g00393 BTB 4.5e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00393 K10523 - aprc:113860926 355.525