Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00386 ATGGCAGAAGAGGATCCAAAGCCTCTGAACTACATCCCTGAGGTTATACTCAAGAAGCGCAAAAACAGGGAAGCATGGGCGTTGAGAAAGAAAGAGCAATTCCAGCAAAAGAATTTTCAATCCATCAAGAAGCCCGAGGATTTCATCCACGAGTATCGCAACCAGGAAGTGGACCTCATTAGACTGAAACGGAGGGTGAAGAGGAAAGTTCCTCAAGCTAAATCCAACATATTGATGATTATTCGGATACAGGGGAAAAAGGACATGCATCCGAAGACAAGGAAGGTGTTGTACAGCTTGGGTTTGAGGAGTATGTTCAGTGCGGTTTTTGTGAAGCCAAGTGAGGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATATGTGACTTATGGATATCCAAACCTTAAAAGCATAAAGGAGCTAATTTACAAGAAAGGACTTGCGAGGATGGATGGGCGGAAAGTTCCCTTGACAGATAATAACACCATTGAGCAGGAATTAGGAAAGTTTGGTATTGTCTGCATTGAGGACATGGTACATCAGATATATAGTGCCGGTCCCCACTTTAAGGAAGTTGTCAGATTTATGTGGCCCTTTGTGCTCAACAAGCCAGCTGAAGGACTGAAAGGGTCAAAAACCCTATACAAGGAGGGTGGAGACACAGGGAACCGTGAGGATCTCATCAACGAACTAATCGACAAAATGAATTAG 711 0.443 MAEEDPKPLNYIPEVILKKRKNREAWALRKKEQFQQKNFQSIKKPEDFIHEYRNQEVDLIRLKRRVKRKVPQAKSNILMIIRIQGKKDMHPKTRKVLYSLGLRSMFSAVFVKPSEGIMAKLQRVEPYVTYGYPNLKSIKELIYKKGLARMDGRKVPLTDNNTIEQELGKFGIVCIEDMVHQIYSAGPHFKEVVRFMWPFVLNKPAEGLKGSKTLYKEGGDTGNREDLINELIDKMN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00386 236 SUPERFAMILY Ribosomal protein L30p/L7e 78 236 IPR036919 -
Lapu1g00386 236 Pfam Ribosomal protein L30p/L7e 79 128 IPR016082 -
Lapu1g00386 236 NCBIfam 60S ribosomal protein uL30 14 236 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lapu1g00386 236 CDD Ribosomal_L7_archeal_euk 77 236 IPR035808 -
Lapu1g00386 236 PANTHER 60S RIBOSOMAL PROTEIN L7 9 236 IPR039699 -
Lapu1g00386 236 Gene3D - 77 236 IPR036919 -
Lapu1g00386 236 FunFam 60S ribosomal protein L7 77 181 - -
Lapu1g00386 236 FunFam 60S ribosomal protein L7-1 isoform A 182 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00386 Lapu-Chr1 13971526 13974379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00386 1 236 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 55.061 2.36e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00386 K02937 - gmx:100306107 418.313