Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00378 ATGGTGTACTGTAGTCACTGTGCCAAAAATGTAGCCGGAGAGCGACTGGATGACGGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTCTTTGCTGAGGAGCCTACATTTGTCAAGAATGCAGCAGGACAGAGTAAATTATCAGGTAATTATGTAAGAACAGTTCAAAGTGAGTTCTCTGAGTCACGTCAAAGGACTTTAGATAGAGCTCATGAAGAAATTAAACATCTAAGTATTGGTCTTGGAGTTTATGATGACCATATGGCTGACCAAGCATTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTTCGGCACAACAATAAGCCATACCTTCTTATTGATTTTTCAAATTATTTAAGAATAGATGTTTATGTGCTGGGATCAGTCTTCTTGCAGCTTTGTCAAGTGTTGAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTCATAGATATACTCAAAATTTGATTAAGCGAGGGAGTAAGGCAGTCTCTGATACTGCACTGACCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGTGGTCTATGCGGTGCGGCATTATACATATCTGCTCTTGCACATGGAATTAAATGCTCTAAACCCGATATTCTTAGAATTGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTCGAATTTGAGAATACGGAATGTTCTAGCTTGACAGTTGAGGAGTTGGATACCATGGCAAAGGAGCATGAAAAAAATCCAACGGTAATGCCTGAAGGTGAATTGAAAGGGTGTATTTCAAAAGATCTACTGTGTGAGCACAAGGATAGTGGGGCGTCCCATTTTGCACTTGGTTTATGTGAAGCATGCTATAAGGACTTTGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGAGAAAGAGTGAAAAGAGCACAACACGAAGAGAGTGTTGATGAAGCTTGTGATTTGGCGAATGAATCAAATGATCAATTTAAGAGCAACACAGAAGATCTGCCTGCCTGTGTTCCAGAAGGTATTGGGGCTAATGTTGGGAATGAGACCATTAAAGATGGTAAATATGATGATTCATTTAGAGAAGATGATTCAGAAACTTTATCTGATATTGATGATGAAGATGTTGATTTATACATACATGATGAGGAGGGGAGACATATCAAGAAGATACTATGGGAAGCAGCAAATAAGGAGTATCTTGAGGAACAGGCAGCCAAGGAAGCAATTGCAGCTGCTAATAAGAAAGCATTTGAGGCAAATTTTGAAAACTGTTCAGAGGATTTACTTGCAGCAAGAGAGCTTGCTTCATCTGCTTCTGCAGCCGTGGCAAAATCCAGAAAGGAAATGAAACAGAGACGAGCCAATGAGGCAAAAAATATGGGGCCAGCTCAATCTGCGGCAGAGGCCTTCGGCCAAATGTCAAATAGAAAAAGGCAATTGCAGAGTCTGAAATCTAAAGTTAATTTCGATCGCCTGGGTGAATTATTTAATGAATTGGAAAAAACTGATGATCCCAAGAAAGAGAAGAAAGCTCGATTTGATGCGCCCCTAGATAATCATGACAACTTACAGTCATTTGAGCACAAAAATGAGGATGAGATTGGATCAGTGGATGAATTTGAAGATGATATGGGGGAGATGTATCAAAATGGGTTGTCTACTGATAATATTGCAGATACATACTCCCTTGAGGATGATGGATTCGGCTATAATGATGATGATTATTACTGA 1857 0.4066 MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPTFVKNAAGQSKLSGNYVRTVQSEFSESRQRTLDRAHEEIKHLSIGLGVYDDHMADQALTFYKIALERNFTRGRKSEQVQAACLYIAFRHNNKPYLLIDFSNYLRIDVYVLGSVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTQNLIKRGSKAVSDTALTIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILRIVHVCEATLTKRLVEFENTECSSLTVEELDTMAKEHEKNPTVMPEGELKGCISKDLLCEHKDSGASHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERVKRAQHEESVDEACDLANESNDQFKSNTEDLPACVPEGIGANVGNETIKDGKYDDSFREDDSETLSDIDDEDVDLYIHDEEGRHIKKILWEAANKEYLEEQAAKEAIAAANKKAFEANFENCSEDLLAARELASSASAAVAKSRKEMKQRRANEAKNMGPAQSAAEAFGQMSNRKRQLQSLKSKVNFDRLGELFNELEKTDDPKKEKKARFDAPLDNHDNLQSFEHKNEDEIGSVDEFEDDMGEMYQNGLSTDNIADTYSLEDDGFGYNDDDYY* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00378 618 MobiDBLite consensus disorder prediction 589 618 - -
Lapu1g00378 618 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Lapu1g00378 618 SUPERFAMILY Cyclin-like 82 162 IPR036915 -
Lapu1g00378 618 MobiDBLite consensus disorder prediction 488 519 - -
Lapu1g00378 618 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Lapu1g00378 618 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Lapu1g00378 618 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Lapu1g00378 618 FunFam Transcription factor IIIB subunit 173 262 - -
Lapu1g00378 618 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Lapu1g00378 618 Gene3D - 63 164 - -
Lapu1g00378 618 Pfam Transcription factor TFIIB repeat 68 156 IPR013150 GO:0017025
Lapu1g00378 618 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Lapu1g00378 618 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 525 IPR000812 GO:0006352|GO:0070897
Lapu1g00378 618 Gene3D - 173 263 - -
Lapu1g00378 618 Pfam Brf1-like TBP-binding domain 410 539 IPR011665 -
Lapu1g00378 618 SMART cyclin_7 76 158 IPR013763 -
Lapu1g00378 618 SMART cyclin_7 176 259 IPR013763 -
Lapu1g00378 618 SUPERFAMILY Zinc beta-ribbon 2 43 - -
Lapu1g00378 618 Gene3D Single helix bin 403 451 - -
Lapu1g00378 618 SUPERFAMILY Cyclin-like 172 264 IPR036915 -
Lapu1g00378 618 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
Lapu1g00378 618 MobiDBLite consensus disorder prediction 542 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00378 Lapu-Chr1 13735026 13757988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00378 1 525 Inorganic Solute Cotransporters AT2G01280 42.561 4.18e-118 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00378 K15196 - gmx:100817609 974.541