Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00374 ATGTCTCAGACAGAGAAGGATCCGGGTATCAGGCTATTTGGCAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCACGGATGCTTGCAGCAGCATGCAAAAGGCAGAACTGGAAATACCTAGTGAGTGTGGAGAAAACTCTGAAAAACAAGAAAAGACTTCTGATTTGAGGGATAGTAAACAAGAGTCCCAGCATAAAGTGAAGGAAAATGAGCCAATAGAAAATCCCAAACCAGTGGAAGATAATACAGAGAGTGGTGGCTCAGATGAAGATAAAGTCTTAAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGTAATAGTTTGGACACCAAGTTCTGTTATTTTAACAACTACAACGTTAACCAACCTCGGCATTTCTGCAAGAACTGTCAAAGGTATTGGACTGCGGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGAAGGAAGAATAAACACCTAGCGTCTCAATACCGACACATTATAGTAACCTCTAATGGAGTTCCTACATCCAGACTAGAAACTGAGGACACACCTGGTTTCCAACATGTCACAAGTCTTGAATCCTCAGTTCCTTTCAGGTCTTCAACAGATAGCAGCACGGTTTTGAAATTTGGTCCAGATACCCCTCTTTGTGAATCAATGGATTCAATGCTTAATCTTAGAGACAAGAGAAGATGTGTTGATGCAAGTTCTATAAACCGTGTAGAGTATGCTGGGGAACCATCGTTATGTGGATCTTCCCTGACGAATAATGGTACTCAAGGAAATGAATTATCAGAACATAAGACATCAAATTGGTTACAATGTTACCCTGTTCCTCCATGGGTATTACCTTATCCAGGTTGGAATAATGTGAGTTCCATGGAAACAGTTCATCCGTCTTCAGCTCCAATGTGTAGTCCATACAACACTGGTCCTGCAGCCATGCAATGGTGTCCCACTGCAATGGTGGCAATTCCTGGCATGTGCCCACCAAGCATTCCTTTGCAACTTGTACCACCATCATGCTGGAGTGGAACACCACTTTGGAATGCTGGAACTGGGGCAGTGTCTATACGATCCAATGCTTGCCTTTCGCCGTCTTCCTCCACTAGTAACAGTTGCTGCTCAGGCAATGGCTCCCCAACCCTTGGCAAACACGCTAGAGATACGGTTTTTGCTGATGAAGAGAAATCAGAGAAGTGTGTTTTGGTTCCAAAGACCATTAGAATTAATGCCCCAAATGAGGCCTCAAAAAGTCCTATAAGGGCTGCATTAACTATCAAGCATGATCATCAGCAATCTGTAGCAAACGGTGATATTTTGAAGAAAATTGAACCAAAAGAAGGCAAAGATCGCTTATTGGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGAGCATATAG 1440 0.4375 MSQTEKDPGIRLFGRKIPVPECQIPANSGPTDACSSMQKAELEIPSECGENSEKQEKTSDLRDSKQESQHKVKENEPIENPKPVEDNTESGGSDEDKVLKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVTSNGVPTSRLETEDTPGFQHVTSLESSVPFRSSTDSSTVLKFGPDTPLCESMDSMLNLRDKRRCVDASSINRVEYAGEPSLCGSSLTNNGTQGNELSEHKTSNWLQCYPVPPWVLPYPGWNNVSSMETVHPSSAPMCSPYNTGPAAMQWCPTAMVAIPGMCPPSIPLQLVPPSCWSGTPLWNAGTGAVSIRSNACLSPSSSTSNSCCSGNGSPTLGKHARDTVFADEEKSEKCVLVPKTIRINAPNEASKSPIRAALTIKHDHQQSVANGDILKKIEPKEGKDRLLGASQILEANPAAISRAHAFQESI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00374 479 MobiDBLite consensus disorder prediction 1 98 - -
Lapu1g00374 479 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Lapu1g00374 479 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Lapu1g00374 479 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Lapu1g00374 479 MobiDBLite consensus disorder prediction 46 98 - -
Lapu1g00374 479 PANTHER CYCLIC DOF FACTOR 2 1 478 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00374 Lapu-Chr1 13596498 13599360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00374 7 478 C2C2-Dof Transcription Factor Family AT5G39660 36.911 2.37e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu1g00374 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00374 - - gmx:100813787 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00374 1 13596498 13599360 Lapu1g00374 1 13596498 13599360 ECH