Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00370 ATGGGTTCTTCTTCATGGTACTTCAATAATGTTGCTGGTGAAGGTTTTAATGGAGTCAGGAGTTTCATCCCTTCTTCTTTTCACGTGGGTTCCCAAGCTCCGCCGTTGGGTCACGGCAAGGGGGTTTTGGGTCCAAACCTTGAGATGGGTCTTCAGATATTGGACCCTTCAATGGTTCAGCCGCAGGAGAGTTGGGGAACGAAGAGAACCAATGATGAAGAGGTTGGAAACAATAACTTGTTTTTGAAAGGTGGGGACGAAAGAGAAGCTAAGGGCTCCGCTTCAGGGAAAAACGGTTTCACTAAGCTTTGTGCCAGAGGTCACTGGAGGCCAGCTGAAGATGACAAACTTAAGGAGCTTGTGGCCCAATACGGTCCCCAAAACTGGAACTTGATTGCTGAACATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTTAATCAGTTAGATCCTAAGATAAACAAAAAGTGTTTTTGTGAAGAGGAAGAGGAAAGACTTTTGAGTGCTTATAAATTGTATGGTAGCAAATGGGCCATGATTGCTAGACTGTTTCCTGGAAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATGATGTCTAGGAGGCAGAGGGAGCAGTGTAGTAGCATGTATAGAAGGAGAAAAGCTGTTATCAGTGAAGCTCTTCCAAAGGCTTTGAATCTGACATTATCTAACAATGCAACTAGTGATGACTCAACCATCTCAAGCACCATTGATGAATCTGCATCAACTTGCACTAACCTCTCCCTAACTCCTCTTTTTGGACTCTTACACCAACCAGAGTTATCTATTTGGAGAAAGAAAAGCAGATTACACTACAAACGAGAATCTAAAGGGGATGTGTGGTTGAACAAGTATTCAGAAGCTGTGGGAAAAAGGCTAATGGGTGTGGACCAGTCTAGTTTTTCAGATGCAAACTCAGAAGTATCAGTATCTGAGTCAGTTGTCACCAATAGGTCCAATCTCTCAATTTCTGAGGAGAAAGAGAGAGAAACCATGGGTGGTAAGATTAACAGCTCATTCATTGATTTTCTTGGAGTAGGAGCTTCTTAG 1086 0.4291 MGSSSWYFNNVAGEGFNGVRSFIPSSFHVGSQAPPLGHGKGVLGPNLEMGLQILDPSMVQPQESWGTKRTNDEEVGNNNLFLKGGDEREAKGSASGKNGFTKLCARGHWRPAEDDKLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPKINKKCFCEEEEERLLSAYKLYGSKWAMIARLFPGRTDNAVKNHWHVMMSRRQREQCSSMYRRRKAVISEALPKALNLTLSNNATSDDSTISSTIDESASTCTNLSLTPLFGLLHQPELSIWRKKSRLHYKRESKGDVWLNKYSEAVGKRLMGVDQSSFSDANSEVSVSESVVTNRSNLSISEEKERETMGGKINSSFIDFLGVGAS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00370 361 MobiDBLite consensus disorder prediction 62 96 - -
Lapu1g00370 361 Pfam Myb-like DNA-binding domain 106 152 IPR001005 -
Lapu1g00370 361 Pfam Myb-like DNA-binding domain 160 201 IPR001005 -
Lapu1g00370 361 PANTHER MYB PROTEIN-RELATED 106 251 - -
Lapu1g00370 361 FunFam MYB transcription factor 106 157 - -
Lapu1g00370 361 SMART sant 157 205 IPR001005 -
Lapu1g00370 361 SMART sant 105 154 IPR001005 -
Lapu1g00370 361 ProSiteProfiles Myb-like domain profile. 106 152 IPR001005 -
Lapu1g00370 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 156 IPR017930 -
Lapu1g00370 361 CDD SANT 169 203 IPR001005 -
Lapu1g00370 361 CDD SANT 109 150 IPR001005 -
Lapu1g00370 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 207 IPR017930 -
Lapu1g00370 361 Gene3D - 161 220 - -
Lapu1g00370 361 ProSiteProfiles Myb-like domain profile. 153 203 IPR001005 -
Lapu1g00370 361 MobiDBLite consensus disorder prediction 62 77 - -
Lapu1g00370 361 SUPERFAMILY Homeodomain-like 106 199 IPR009057 -
Lapu1g00370 361 Gene3D - 106 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00370 Lapu-Chr1 13483590 13485826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00370 105 223 MYB Transcription Factor Family AT1G69560 78.992 7.82e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g00370 Myb_DNA-binding 9.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00370 K09422 - gmx:100791795 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00370 1 13483590 13485826 Lapu1g00370 1 13483590 13485826 ECH