Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00361 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCATACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTCCCCATGAGGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCGGCCATAGCTTCCTATCTTCCACAAAGAACAGATAATGATATCAAGAATTATTGGAACACCCATCTAAAGAAGAAGCTTAAGAAATTTCAAGCTGCCTTAGATCCCCACTCAGCATCAGACTCAACAACCAGTGGTCAATATCTACCAAAGAGCTTTAACGACAGAAGAAGTTTAGACATCAGCAGCAACAATAACCATGCCTCATCCGTTAGGCTTAGTCAGTCTCAGTCCTCAACATATGCCTCAAGCACTGAGAACATCTCGAGACTCTTGGAAGGTTGGATGAGATCTTCCCCAAAGCCACTCAAGAGATCCCAAGATGAAGAGCTCCAAAGCATAGATGATGATAATAACAACAACTTTGAAAGCACTAATAAGCTAGTGAAGTGCGCATCACTGCCTGCTTTGAACCATCATCATCAGCACAAAAGAAACAAAGATGAGCAAGAAGGTGGCGTAGATATAGCTTCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACATGCGATTCCATGCCTGAAAAGAGTTATGAAGCTGCTGCGGAATCTTCTCATGAAGTCTCCCACGAAGAGAGGATTAGGCAAAAGTCTGAGAACAACAGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTGGATGAAAGCGTTGGTCAAGTGGAGGAGATGATGGAGTTATCTCCAATGTTCTAA 996 0.4367 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPHSASDSTTSGQYLPKSFNDRRSLDISSNNNHASSVRLSQSQSSTYASSTENISRLLEGWMRSSPKPLKRSQDEELQSIDDDNNNNFESTNKLVKCASLPALNHHHQHKRNKDEQEGGVDIASHEEFDSILSFENLNNAAWDKSTCDSMPEKSYEAAAESSHEVSHEERIRQKSENNSAPPLSFLEKWLLDESVGQVEEMMELSPMF* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00361 331 MobiDBLite consensus disorder prediction 268 305 - -
Lapu1g00361 331 CDD SANT 69 112 IPR001005 -
Lapu1g00361 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lapu1g00361 331 FunFam MYB-related transcription factor 13 66 - -
Lapu1g00361 331 Gene3D - 13 66 - -
Lapu1g00361 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu1g00361 331 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu1g00361 331 CDD SANT 16 61 IPR001005 -
Lapu1g00361 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lapu1g00361 331 Gene3D - 68 136 - -
Lapu1g00361 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 216 - -
Lapu1g00361 331 MobiDBLite consensus disorder prediction 125 171 - -
Lapu1g00361 331 MobiDBLite consensus disorder prediction 280 298 - -
Lapu1g00361 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu1g00361 331 SMART sant 66 114 IPR001005 -
Lapu1g00361 331 SMART sant 13 63 IPR001005 -
Lapu1g00361 331 FunFam Transcription factor MYB60 68 136 - -
Lapu1g00361 331 MobiDBLite consensus disorder prediction 187 210 - -
Lapu1g00361 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu1g00361 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00361 Lapu-Chr1 13258828 13260790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00361 1 136 MYB Transcription Factor Family AT5G62470 81.884 2.52e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g00361 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00361 K09422 - gmx:100817854 519.235