Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00329 ATGGTGCCCTATAAATCTCAAGGTGGTGCTGAACAACTTGCAAATGTCGAGGTTTTGGGTGGATCTGCTGCTAAAAATGCCACACCTGCTGGAGGAAGTGGGAAGCAGCGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGTGGGAAAGAGAATGCAATATGGGAATTGCTTGTCAAATTATCAAGAGCAACACCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTAAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTACTTACCTGAATCACCAGCTGATGGTAAAGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCTTTTCAGGCGCAGATTCTTCCCCGGGAATGCCAATCAATGATGCCTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACTTTGACAACCTCCGAAACACTTCCTTCATCACATGATAAGCAAACTCATCCCCACTCGGAGACTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCTCCACATAAAAGACAGAGAATCGATGATGGTTCCGAGGATGGTTTCACTGCTTCCCATCTAAGAAAGACTGAACAAAAGAATGACTGCAATGTTGGTCAGTTGGATCGAAATTTGTATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAAAAGGGATGAACATAAGGAGAGTGGACAGTAA 846 0.4267 MVPYKSQGGAEQLANVEVLGGSAAKNATPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDSGKENAIWELLVKLSRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSFSGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPSSHDKQTHPHSETSGSSDALASTLSPHKRQRIDDGSEDGFTASHLRKTEQKNDCNVGQLDRNLYDDAGFGFDLETKRDEHKESGQ* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00329 281 SUPERFAMILY Homeodomain-like 34 104 IPR009057 -
Lapu1g00329 281 MobiDBLite consensus disorder prediction 266 281 - -
Lapu1g00329 281 Coils Coil 141 161 - -
Lapu1g00329 281 MobiDBLite consensus disorder prediction 223 250 - -
Lapu1g00329 281 MobiDBLite consensus disorder prediction 110 127 - -
Lapu1g00329 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 60 IPR006447 GO:0003677
Lapu1g00329 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 72 105 IPR006447 GO:0003677
Lapu1g00329 281 Pfam MYB-CC type transfactor, LHEQLE motif 138 184 IPR025756 -
Lapu1g00329 281 MobiDBLite consensus disorder prediction 187 281 - -
Lapu1g00329 281 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 34 228 IPR044848 GO:0003700
Lapu1g00329 281 MobiDBLite consensus disorder prediction 110 140 - -
Lapu1g00329 281 Gene3D - 34 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00329 Lapu-Chr1 12482351 12486558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00329 85 258 G2-like Transcription Factor Family AT2G01060 51.429 2.54e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu1g00329 Myb_CC_LHEQLE 9.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00329 - - gmx:100783132 438.728