Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00326 ATGGGGAAGAAGCGAAAGGTAGCACCCAAATCTTCTCAATCCGCTGAACCTCCACTCAAACTTCACCAACCTGAACCCCAAATTGCGCCTCCTGAGTACGAGGAAGTCGAAGTGGAAGAAGAGGAGGAAGAAGAAGTAGAAGAGGAAGTAGAAGAAGAGGAGGAGGAAGAGGAAGAGGAAGAAGAAGAAGACGATGAAGAGCAACAACAGCAACAGGACGAGGACGACGACCCGATCCAGAAGCTTCTGGAACCCCTAAGCAAGGACCAGATCTTGAACCTTCTGTGTGAGGCGGCGGCCAATCACCGTGACGTGGCGGATCGAATCCGCAAGGCGGCGGACGAGGATCCCGTGCACCGGAAGATCTTCGTGCACGGGCTGGGCTGGGACACCACCGCGGGAACCCTAATCAGTGCGTTCCGGCAGTACGGAGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCTGGTAAGTCCAAGGGTTACGGATTCATCCTCTTCAAGACGCGGCGTGGCGCGCGCAACGCGCTCAAGCAGCCCCAGAAGAAGATCGGCAACCGTATGACGGCGTGCCAGCTGGCGTCCATCGGCCCCGTCAGTAGCAGCCAGAGCCAGCCGCAGGCATTGCCTTCCGTGGCGCCGGTGCTGTCATCGTCGGCTTCGGAGTACACGCAGAGGAAGATCTATGTGAGCAACGTCGGTGCGGAACTCGATCCACAGAAGCTTTTGGCGTTCTTTTCACGGTTCGGGGAAATTGAGGAGGGGCCTTTGGGGCTGGATAAGTTAACTGGAAAACCGAAAGGGTTTTGTTTGTTTGTTTACAGGAATCCGGAGAGTGCAAAGAGAGCCTTGGAGGAGCCTCATAAGGACTTTGAGGGGCATATTTTGCATTGCCAGAAGGCGATTGATGGGCCTAAGCCTGGGAAGTTGCAGCAGCAGCTACACGGGAACGTGAATGCTCAGGCCCAGCGGACCCAGTTTCAGAGGAATGATACTGCCAATGCAGGTGGTGCGTATGTTGGTGGTGCTGCGACAGCGCAGCCGGGGCACTTGATGGCTCCGGCTGGTCCAGGGATTGGGTTTAACCAGGCGGCGTTGAATCCGGCATTGGGGCAGGCGTTGACAGCCCTCTTGGCGTCACAGGGGACGTTGGGACTGACGAATTTGTTGGGGAGTATTGGAACGAGTGCTTCGGTGAACCCTGGCGTGCCTGCTGCAGGGGCTGGGGTACAGAGTGGTTACAGTGCTCAGTCAAATATTAGTCCGGGTGTTATTGGAGGATATGGGACCCAGGTGGGGTTGCAGGCTGCATATCCAAATCCGAATCAGCAGATAGGGCAGGGTGGTTCTGGAAGAGGGCAATATGGTGGTGGTGGTGCGCCTTACATGGGGCATTAG 1401 0.5646 MGKKRKVAPKSSQSAEPPLKLHQPEPQIAPPEYEEVEVEEEEEEEVEEEVEEEEEEEEEEEEEDDEEQQQQQDEDDDPIQKLLEPLSKDQILNLLCEAAANHRDVADRIRKAADEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSSSQSQPQALPSVAPVLSSSASEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRNPESAKRALEEPHKDFEGHILHCQKAIDGPKPGKLQQQLHGNVNAQAQRTQFQRNDTANAGGAYVGGAATAQPGHLMAPAGPGIGFNQAALNPALGQALTALLASQGTLGLTNLLGSIGTSASVNPGVPAAGAGVQSGYSAQSNISPGVIGGYGTQVGLQAAYPNPNQQIGQGGSGRGQYGGGGAPYMGH* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00326 466 FunFam UBP1-associated protein 2A 212 344 - -
Lapu1g00326 466 SMART rrm1_1 228 300 IPR000504 GO:0003723
Lapu1g00326 466 SMART rrm1_1 121 193 IPR000504 GO:0003723
Lapu1g00326 466 SUPERFAMILY RNA-binding domain, RBD 112 204 IPR035979 GO:0003676
Lapu1g00326 466 SUPERFAMILY RNA-binding domain, RBD 210 322 IPR035979 GO:0003676
Lapu1g00326 466 MobiDBLite consensus disorder prediction 443 466 - -
Lapu1g00326 466 Coils Coil 33 76 - -
Lapu1g00326 466 MobiDBLite consensus disorder prediction 1 76 - -
Lapu1g00326 466 FunFam UBP1-associated protein 2A 113 197 - -
Lapu1g00326 466 Gene3D - 32 206 IPR012677 -
Lapu1g00326 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
Lapu1g00326 466 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 32 316 - -
Lapu1g00326 466 Gene3D - 215 336 IPR012677 -
Lapu1g00326 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Lapu1g00326 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 296 IPR000504 GO:0003723
Lapu1g00326 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Lapu1g00326 466 MobiDBLite consensus disorder prediction 32 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00326 Lapu-Chr1 12423347 12431558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00326 213 310 C2H2 Transcription Factor Family AT2G19380 32.653 1.46e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00326 K12741 - gmx:100784200 652.129