Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00312 ATGGATCAACACCATCGCCACGTCAGCGCCACCACCTCAACTAACAATCCCGTGCTCCGCTGCACCACCGTCTGCACTCTCCCCTTCGCGCGCCTCGTCGCCGCCTCCCGCCGCCGCCTCTTCCTCTCTGACTGCGCCGACCGTCGATCCGATGACGACGACGACGGCGCTGAGTGCGGCTACTCCCGCGCGGTATTGGTCCTCGACATGGTCTGGAACCTCGCCTTCGTCGTTGTGGCCGCCGGCGTCCTCCTCTCCACGCTCCGTGAGCGGCCGTCTACGCCGCTCAGACTCTGGCTCTGTGGCTACGCGTTCGAGTGCGTTCTTCATATGGCTTTTGTCTTCTTTGAGTTTCGAATCGGAGTTCGCGATTCCTTTTCTCACACTACCTACAGCATTGTGAAGAAGCTAGAGCCAATGAACACTCTAGCATCTTCTGTTTGGTGGGTGTTTGGATTTTATTGGATTGTTGTGGGTGGCCAAGCACTTTTGGATGATTCTCCGCGGCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACATATTTTTTATTATCTTTTGCATTGGGATGGCCTGTATAGTTTTCTTTGCTCTCTTCTGCATCATTCCAATATTTGCACTAGCTTATGCTATGAAAATCAGAGAAGGCGCATCAGAAGAAGATATCAGGTCACTTCCTATGTATAGGTTTAGTCAGTCAAATTCATTGGCGATGGTTGATGACAACAAGAAGCAACTTGTTAATGCAAGTGTAGATTCATGCAATGGAAGCCATATGGGTGAACTTTCTCTGAATCCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGCTGATGGAGCAGAACTGTATCGCTTACCTTGTACCCACCATTTTCACTGTGAATGCATTGGCCGTTGGCTTCGAACAAAAGCAACCTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGA 972 0.4969 MDQHHRHVSATTSTNNPVLRCTTVCTLPFARLVAASRRRLFLSDCADRRSDDDDDGAECGYSRAVLVLDMVWNLAFVVVAAGVLLSTLRERPSTPLRLWLCGYAFECVLHMAFVFFEFRIGVRDSFSHTTYSIVKKLEPMNTLASSVWWVFGFYWIVVGGQALLDDSPRLYWLTVVFLAFDIFFIIFCIGMACIVFFALFCIIPIFALAYAMKIREGASEEDIRSLPMYRFSQSNSLAMVDDNKKQLVNASVDSCNGSHMGELSLNPDDSECCICLCPYADGAELYRLPCTHHFHCECIGRWLRTKATCPLCKFNILRGDTLV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00312 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 319 IPR013083 -
Lapu1g00312 323 ProSiteProfiles Zinc finger RING-type profile. 272 313 IPR001841 -
Lapu1g00312 323 PANTHER TARGET OF ERK KINASE MPK-1 44 317 - -
Lapu1g00312 323 SMART ring_2 272 312 IPR001841 -
Lapu1g00312 323 Pfam Ring finger domain 271 313 IPR001841 -
Lapu1g00312 323 SUPERFAMILY RING/U-box 266 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00312 Lapu-Chr1 12057047 12061464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00312 53 320 C3H Transcription Factor Family AT1G68070 45.645 2.43e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00312 - - gmx:100806994 567