Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00295 ATGCTAATGCCACTCTCTCGTCTGAGCCACTCTCATGAAAATGAATTACCTTTCAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCTCTTGGCAAACTCCATTCTCTGGAGATGAAGTGGAAGTTCATTTCAGAGGACATGTTGAGAATGGCGAAACTCTTGAATCAAGTTATGATAAAGGGTCAACGTTTCGTTTCAAATTAGGCCAATGTGAAGTTATCAAAGGATGGGATGAAGGGGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGAGAACAAGGGTCTCCTCCATTGGTTCCTCCCAATGCAACTCTCATTTATGACATTGAAATGCTGTCTTGGACTACCATAAGGGATTTGACTGGCGACGGAGGAATTATGAAAAAGCTAACAAGAGAGGGAGAAGGATGGGCAACTCCTAGAGAGGCTGATGAGGTGCTAGTTAAATATGAAGCAAGGTTGGAGAATGGGATGCTTGTCTCAAAGTCTAACGAGGGAGTGGAGTTTAATGTAAGTGATGGTTATCTATGTCCTGCTATGAGTATAGCAGTAAAGACAATGAGAAAGGGTGAAGTGGCAGAACTAGCTATGAGATTATTTTACGGGCACATTCTAAATTCAAATATGATCACTGAGCTAGATGGTGTTCTTCCATCAGAATCTAATTTAACTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTTATTGATGTCACAGGAGATAAGAAGATACTGAAAAAAATTAAGAAAGTGGGAGAGGGGTTTGATCGTCCTAACGAGGGATCCCTAGTGAAAGTGATATATTTGTGTAAAGGGGAAGATGATACAATTATAGAGAGGAAAGGATCACAGGAAGAACCTTTTGAGTTCACAACTCAGGAAGAACAGGTACCCGAGGGTCTAGAAAGAGCAATAATGACAATGAGAAAAGAAGAACAAGCTCTTGTAACCATTGATGCAGAATATTTGTGCGGCTATAATAACTCACAGGGAAACACAACAAATAATAAAGTCCTTTATTATGAAGTTGAGTTGATTGATTTTGTTAAGGAAAAACCATTTTGGAAAATGGACACGCAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAACATGATGGAAATCTTCTGTTCAAAGCTGAAAATTTCAGGCACGCATCTAAGAAATATGAAAAGGCTGCAAAGTACATTGAGTTTGATCACTCATTCAATGAAGATGAGAAGCATCGCTCTAATACCTTACGTTTATCCTGTAATTTGAACAATGCTGCCTGTAAACTTAAATTAGGGGACTACATTGAAGCTTCAAGACTATGCACAAAGGTCGTAGAACAAGACCCTTTAAATGTGAAGGCTCTTTATAGAAGATGCCAAGCATACGTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAACGAGCTTTGACTATTGATCCAAACAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACTCAAGCAAAAGGAATACAATAGATATGAAGCTGGCATCTTCAGCACAATGGTTTCAAGAATGAGCTAG 1599 0.3921 MLMPLSRLSHSHENELPFKEIGNEGLTKRILRKGVSWQTPFSGDEVEVHFRGHVENGETLESSYDKGSTFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGEQGSPPLVPPNATLIYDIEMLSWTTIRDLTGDGGIMKKLTREGEGWATPREADEVLVKYEARLENGMLVSKSNEGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMRLFYGHILNSNMITELDGVLPSESNLTSIKLELVSWKIVIDVTGDKKILKKIKKVGEGFDRPNEGSLVKVIYLCKGEDDTIIERKGSQEEPFEFTTQEEQVPEGLERAIMTMRKEEQALVTIDAEYLCGYNNSQGNTTNNKVLYYEVELIDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKAENFRHASKKYEKAAKYIEFDHSFNEDEKHRSNTLRLSCNLNNAACKLKLGDYIEASRLCTKVVEQDPLNVKALYRRCQAYVKTSDLEKAEADIKRALTIDPNNRDIKLEYKELKLKQKEYNRYEAGIFSTMVSRMS* 533
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00295 532 Gene3D Tetratricopeptide repeat domain 369 525 IPR011990 GO:0005515
Lapu1g00295 532 SUPERFAMILY FKBP-like 254 385 - -
Lapu1g00295 532 FunFam Peptidyl-prolyl cis-trans isomerase 19 132 - -
Lapu1g00295 532 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 278 366 IPR001179 GO:0003755
Lapu1g00295 532 Pfam Tetratricopeptide repeat 466 499 IPR001440 GO:0005515
Lapu1g00295 532 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 274 363 IPR001179 GO:0003755
Lapu1g00295 532 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 40 128 IPR001179 GO:0003755
Lapu1g00295 532 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 155 213 IPR001179 GO:0003755
Lapu1g00295 532 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 159 239 IPR001179 GO:0003755
Lapu1g00295 532 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 43 131 IPR001179 GO:0003755
Lapu1g00295 532 PANTHER PEPTIDYLPROLYL ISOMERASE 20 134 - -
Lapu1g00295 532 SUPERFAMILY TPR-like 373 520 IPR011990 GO:0005515
Lapu1g00295 532 SUPERFAMILY FKBP-like 22 132 - -
Lapu1g00295 532 FunFam Peptidylprolyl isomerase 371 526 - -
Lapu1g00295 532 Gene3D - 135 250 IPR046357 GO:0003755
Lapu1g00295 532 ProSiteProfiles TPR repeat profile. 466 499 IPR019734 GO:0005515
Lapu1g00295 532 SMART tpr_5 383 416 IPR019734 GO:0005515
Lapu1g00295 532 SMART tpr_5 466 499 IPR019734 GO:0005515
Lapu1g00295 532 SMART tpr_5 432 465 IPR019734 GO:0005515
Lapu1g00295 532 Gene3D - 251 368 IPR046357 GO:0003755
Lapu1g00295 532 Gene3D - 18 134 IPR046357 GO:0003755
Lapu1g00295 532 SUPERFAMILY FKBP-like 136 218 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu1g00295 Lapu-Chr1 11702784 11709290 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00295 20 531 Calmodulin-binding Proteins AT5G48570 53.179 0.0 557
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00295 - - pvu:PHAVU_001G118200g 959.133
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00295 1 11702784 11709290 Lapu1g00295 1 11702784 11709290 ECH