Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu1g00295 | ATGCTAATGCCACTCTCTCGTCTGAGCCACTCTCATGAAAATGAATTACCTTTCAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCTCTTGGCAAACTCCATTCTCTGGAGATGAAGTGGAAGTTCATTTCAGAGGACATGTTGAGAATGGCGAAACTCTTGAATCAAGTTATGATAAAGGGTCAACGTTTCGTTTCAAATTAGGCCAATGTGAAGTTATCAAAGGATGGGATGAAGGGGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGAGAACAAGGGTCTCCTCCATTGGTTCCTCCCAATGCAACTCTCATTTATGACATTGAAATGCTGTCTTGGACTACCATAAGGGATTTGACTGGCGACGGAGGAATTATGAAAAAGCTAACAAGAGAGGGAGAAGGATGGGCAACTCCTAGAGAGGCTGATGAGGTGCTAGTTAAATATGAAGCAAGGTTGGAGAATGGGATGCTTGTCTCAAAGTCTAACGAGGGAGTGGAGTTTAATGTAAGTGATGGTTATCTATGTCCTGCTATGAGTATAGCAGTAAAGACAATGAGAAAGGGTGAAGTGGCAGAACTAGCTATGAGATTATTTTACGGGCACATTCTAAATTCAAATATGATCACTGAGCTAGATGGTGTTCTTCCATCAGAATCTAATTTAACTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTTATTGATGTCACAGGAGATAAGAAGATACTGAAAAAAATTAAGAAAGTGGGAGAGGGGTTTGATCGTCCTAACGAGGGATCCCTAGTGAAAGTGATATATTTGTGTAAAGGGGAAGATGATACAATTATAGAGAGGAAAGGATCACAGGAAGAACCTTTTGAGTTCACAACTCAGGAAGAACAGGTACCCGAGGGTCTAGAAAGAGCAATAATGACAATGAGAAAAGAAGAACAAGCTCTTGTAACCATTGATGCAGAATATTTGTGCGGCTATAATAACTCACAGGGAAACACAACAAATAATAAAGTCCTTTATTATGAAGTTGAGTTGATTGATTTTGTTAAGGAAAAACCATTTTGGAAAATGGACACGCAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAACATGATGGAAATCTTCTGTTCAAAGCTGAAAATTTCAGGCACGCATCTAAGAAATATGAAAAGGCTGCAAAGTACATTGAGTTTGATCACTCATTCAATGAAGATGAGAAGCATCGCTCTAATACCTTACGTTTATCCTGTAATTTGAACAATGCTGCCTGTAAACTTAAATTAGGGGACTACATTGAAGCTTCAAGACTATGCACAAAGGTCGTAGAACAAGACCCTTTAAATGTGAAGGCTCTTTATAGAAGATGCCAAGCATACGTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAACGAGCTTTGACTATTGATCCAAACAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACTCAAGCAAAAGGAATACAATAGATATGAAGCTGGCATCTTCAGCACAATGGTTTCAAGAATGAGCTAG | 1599 | 0.3921 | MLMPLSRLSHSHENELPFKEIGNEGLTKRILRKGVSWQTPFSGDEVEVHFRGHVENGETLESSYDKGSTFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGEQGSPPLVPPNATLIYDIEMLSWTTIRDLTGDGGIMKKLTREGEGWATPREADEVLVKYEARLENGMLVSKSNEGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMRLFYGHILNSNMITELDGVLPSESNLTSIKLELVSWKIVIDVTGDKKILKKIKKVGEGFDRPNEGSLVKVIYLCKGEDDTIIERKGSQEEPFEFTTQEEQVPEGLERAIMTMRKEEQALVTIDAEYLCGYNNSQGNTTNNKVLYYEVELIDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKAENFRHASKKYEKAAKYIEFDHSFNEDEKHRSNTLRLSCNLNNAACKLKLGDYIEASRLCTKVVEQDPLNVKALYRRCQAYVKTSDLEKAEADIKRALTIDPNNRDIKLEYKELKLKQKEYNRYEAGIFSTMVSRMS* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu1g00295 | 532 | Gene3D | Tetratricopeptide repeat domain | 369 | 525 | IPR011990 | GO:0005515 | |
| Lapu1g00295 | 532 | SUPERFAMILY | FKBP-like | 254 | 385 | - | - | |
| Lapu1g00295 | 532 | FunFam | Peptidyl-prolyl cis-trans isomerase | 19 | 132 | - | - | |
| Lapu1g00295 | 532 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 278 | 366 | IPR001179 | GO:0003755 | |
| Lapu1g00295 | 532 | Pfam | Tetratricopeptide repeat | 466 | 499 | IPR001440 | GO:0005515 | |
| Lapu1g00295 | 532 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 274 | 363 | IPR001179 | GO:0003755 | |
| Lapu1g00295 | 532 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 40 | 128 | IPR001179 | GO:0003755 | |
| Lapu1g00295 | 532 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 155 | 213 | IPR001179 | GO:0003755 | |
| Lapu1g00295 | 532 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 159 | 239 | IPR001179 | GO:0003755 | |
| Lapu1g00295 | 532 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 43 | 131 | IPR001179 | GO:0003755 | |
| Lapu1g00295 | 532 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 20 | 134 | - | - | |
| Lapu1g00295 | 532 | SUPERFAMILY | TPR-like | 373 | 520 | IPR011990 | GO:0005515 | |
| Lapu1g00295 | 532 | SUPERFAMILY | FKBP-like | 22 | 132 | - | - | |
| Lapu1g00295 | 532 | FunFam | Peptidylprolyl isomerase | 371 | 526 | - | - | |
| Lapu1g00295 | 532 | Gene3D | - | 135 | 250 | IPR046357 | GO:0003755 | |
| Lapu1g00295 | 532 | ProSiteProfiles | TPR repeat profile. | 466 | 499 | IPR019734 | GO:0005515 | |
| Lapu1g00295 | 532 | SMART | tpr_5 | 383 | 416 | IPR019734 | GO:0005515 | |
| Lapu1g00295 | 532 | SMART | tpr_5 | 466 | 499 | IPR019734 | GO:0005515 | |
| Lapu1g00295 | 532 | SMART | tpr_5 | 432 | 465 | IPR019734 | GO:0005515 | |
| Lapu1g00295 | 532 | Gene3D | - | 251 | 368 | IPR046357 | GO:0003755 | |
| Lapu1g00295 | 532 | Gene3D | - | 18 | 134 | IPR046357 | GO:0003755 | |
| Lapu1g00295 | 532 | SUPERFAMILY | FKBP-like | 136 | 218 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu1g00295 | Lapu-Chr1 | 11702784 | 11709290 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu1g00295 | 20 | 531 | Calmodulin-binding Proteins | AT5G48570 | 53.179 | 0.0 | 557 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu1g00295 | - | - | pvu:PHAVU_001G118200g | 959.133 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lapu1g00295 | 1 | 11702784 | 11709290 | Lapu1g00295 | 1 | 11702784 | 11709290 | ECH |