Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00284 ATGCCTTCGAGCTCGAATTCGAAGCAGAAACGGAAGCAATCCAAGACGCAGCTGCAGAACTCACCATTGTCGTCGAATGTCACTACCACGCCTTCCAAAACACAACAACAACAAGAACAGGAGCATGCCTCTTTATGCGAAGAAGCTTCTCGAAAGTTCCCTTCTCTCATCGCTAAATCCGCGTTCGTCGCTGAAATCACCCATCTCGACGACACCGTTCCTCCTTTCAAGGGCTTCAGAATTTGGCTCTCCGAACCTTCCATGCTCTCCTCATCTCTCTCCCCTGGTTCCATTGTCTCGGTGTCTATGCCATCTTCAGACGACAAAATTTCAGAATTGCATAGCTTTCCCCTCGTGTCATTAGCTAAAGAGTGTGCCAAATGTCATGGATTGGAAATTGGGAAGGCAGTTGACGATGATGATGCAGGGAACTACTTTGTGCTTGCAACGGTGTTTCCTGCTAGTAAGGTTTTGAAGAATGGAGTACGCCTGTCTTCAAACCTTTATAATACCATGGGATGTCCACCTTTGGGCACAAGTGTGTTTGTTTGTGCATTACAGAAACAACCCTTGCCTACTCTTGCCAGTGGCAGCAATCAACAGCATTATATGGAAAATAATTGTCTACCTATTAATAATTGCAAGGAATTGTATCTTCAATTGGTTCCTTCTAAAGATGGGCTACCATTGAAGTTTGATAATTTTCCCTTATTGGACGTGTCTAAGGTGAAATCTCGTGTCCAATTTGAGAATGACACTGTTGCATCTCCTGCAACACCTTCTTATGGATCAAAGTTTTCTAGTGCTAATAGTCTGTCTTCTCCACAATTTGACGATTCAGCATCTAGTGTGCCAAATCAGAAGAGTCAATCACTGATTTCATCTGATGTTAGCTTAGCATTAAGGGATGAAAGTTCTAAACAATCACTTCAGGCATGGGCAACTTCATGGTTATATTCTCGGTCTTTACTTCTAGGGAATCTTGTCAATGTCCCAATGTTTTCAGAGTGCTTTTTCCAAGTGATAGGAGCTAAGAAGCAGCCAGTTATCAAATCTGGTTATTATCCATCAAATGGAAACAGTGATTTATATTCCGAGGATTCTGAAATAACAGATTGTGTAAACCAGGCTTTCACTGTTAATTATGAAACAAAGGTATTTTTATCTCTGCCATCAAATGCAGCATCTGAAGAGCCAATTCAAAGGGATATACCTTGTGTGAAACTGGAACACAAAGTTGCTAATGCTAGCTTACCAGATAAAATTTCTAAATTGGGCGGTCTATCCAAAGAATATACACTTCTAAAGGACATAATTTCTTCATCAGTGAATGATGCTTTATCAAGTTTTGGTCTAAGAACTACAAGAGGTGTCCTTCTTCATGGTCCAACTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTACTCATGATGCTGGAGTCAAATTTTTCCCGATAAATGGACCTGAAATTGTTACTCAATATTATGGGGAAAGTGAGCAAGCATTGCATAAAGTTTTTGATTCAGCCATTGAAGCTGCGCCTGCTGTGGTATTTATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGAAGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCGACTTTATTGAATATGATGGATGGAATTAGTAGAACCGAAGGGTTACTTGTAATTGCAGCCACTAACCGCCCTGATCACATTGAGCCAGCTCTAAGGCGCCCTGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCCCCCAAACAACGTTCAGATATTTTGTTCACTCTTCTCAATGAAATGGATCATCGTCTCTCTGAGTTACAAATTGAACACCTTGCCACAGCCACTCATGGTTTTGTGGGTGCTGATCTAGCTGCACTTTGCAATGAGGCAGCCTTGATTTGTCTACGACGTTATGCTAGTCTTAAGACTTATTATTCCTGTTCTGATTATATAACAGAGAAACCTGTGCTGATGAATGGTGCAACAAACTCAAATGATCATTTGGGTGAGGAAACTTCATCTGTTTCAGATATGTCGGCCACCAGCCATGTATTACCTTCTTGCATGATGAGAATGACTTACGAAACTATGGAAATAATTCCTGATAGTGGTGAAGAGCAGATTTTGAAAGTAAGTTTTGAAGATTTTCAGAAGGCCAGGATGAAAATAAGGCCTAGTGCCATGAGAGAGGTAATCCTTGAAGTTCCAAAGGTTAATTGGGAAGATGTTGGTGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTGGAATGGCCACAGAAACACCATGATGCATTCGATCGTATTGGAACTCGACCTCCTACAGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGTAAAACCCTCATGGCACGTGCAGTTGCTTCTGAGGCAGGGTTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTCAGATCATTATTTGCAAAAGCAAGGGCCAATGCCCCATCAATAGTATTTTTTGATGAAATAGACAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTACATCAAAGAGTTAATGTCACTGTTATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCGAATGAGGTGGATAGGGAAGAGATATTTCGCATTCATCTGCGTAAAATCCCATGTGGTTCTGATGTTAGCCTTAGAGAACTAGCTATACTCACAGATGGTTGTACTGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAACCTCGATGCTTCAGTGATAACAATGGATCATTTAAAGATGGCAATCAAACAGATCCAGCCATCAGACGTTCACTCCTACCAAAAGCTGTCAACAAAATTTCAAAGGGCCGTCCACTGCTGTGATATAAAGGAAGAATTCAATCATATGCAGTGCGACAGTAGACCTACCCAGTTCAACATTTGGAAGTTCATAAAATCTTGGACGTTGTTCCTCTATCAGACTCCAGCTGCAATCTTCAATTTAAGAACCGCTCAAAGTAGTTAA 3177 0.4196 MPSSSNSKQKRKQSKTQLQNSPLSSNVTTTPSKTQQQQEQEHASLCEEASRKFPSLIAKSAFVAEITHLDDTVPPFKGFRIWLSEPSMLSSSLSPGSIVSVSMPSSDDKISELHSFPLVSLAKECAKCHGLEIGKAVDDDDAGNYFVLATVFPASKVLKNGVRLSSNLYNTMGCPPLGTSVFVCALQKQPLPTLASGSNQQHYMENNCLPINNCKELYLQLVPSKDGLPLKFDNFPLLDVSKVKSRVQFENDTVASPATPSYGSKFSSANSLSSPQFDDSASSVPNQKSQSLISSDVSLALRDESSKQSLQAWATSWLYSRSLLLGNLVNVPMFSECFFQVIGAKKQPVIKSGYYPSNGNSDLYSEDSEITDCVNQAFTVNYETKVFLSLPSNAASEEPIQRDIPCVKLEHKVANASLPDKISKLGGLSKEYTLLKDIISSSVNDALSSFGLRTTRGVLLHGPTGTGKTSLAQLCTHDAGVKFFPINGPEIVTQYYGESEQALHKVFDSAIEAAPAVVFIDELDAIAPARKEGGEELSQRLVATLLNMMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRSDILFTLLNEMDHRLSELQIEHLATATHGFVGADLAALCNEAALICLRRYASLKTYYSCSDYITEKPVLMNGATNSNDHLGEETSSVSDMSATSHVLPSCMMRMTYETMEIIPDSGEEQILKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFDRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCGSDVSLRELAILTDGCTGADISLICREAAVAAIEENLDASVITMDHLKMAIKQIQPSDVHSYQKLSTKFQRAVHCCDIKEEFNHMQCDSRPTQFNIWKFIKSWTLFLYQTPAAIFNLRTAQSS* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00284 1058 PANTHER AAA-FAMILY ATPASE 59 1005 - -
Lapu1g00284 1058 Gene3D - 745 992 IPR027417 -
Lapu1g00284 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 646 IPR027417 -
Lapu1g00284 1058 Gene3D - 590 744 - -
Lapu1g00284 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 997 IPR027417 -
Lapu1g00284 1058 ProSitePatterns AAA-protein family signature. 886 904 IPR003960 GO:0005524|GO:0016887
Lapu1g00284 1058 FunFam Calmodulin-interacting protein 111 589 744 - -
Lapu1g00284 1058 FunFam Putative vesicular transport protein (CDC48) 409 587 - -
Lapu1g00284 1058 CDD RecA-like_CDC48_r2-like 755 914 - -
Lapu1g00284 1058 FunFam calmodulin-interacting protein 111 isoform X1 741 916 - -
Lapu1g00284 1058 Pfam ATPase family associated with various cellular activities (AAA) 784 915 IPR003959 GO:0005524|GO:0016887
Lapu1g00284 1058 Pfam ATPase family associated with various cellular activities (AAA) 458 587 IPR003959 GO:0005524|GO:0016887
Lapu1g00284 1058 FunFam spermatogenesis-associated protein 5-like protein 1 917 999 - -
Lapu1g00284 1058 Gene3D - 917 987 - -
Lapu1g00284 1058 Pfam AAA+ lid domain 613 644 IPR041569 -
Lapu1g00284 1058 Pfam AAA+ lid domain 938 983 IPR041569 -
Lapu1g00284 1058 Gene3D - 407 589 IPR027417 -
Lapu1g00284 1058 MobiDBLite consensus disorder prediction 1 43 - -
Lapu1g00284 1058 MobiDBLite consensus disorder prediction 1 45 - -
Lapu1g00284 1058 SMART AAA_5 780 918 IPR003593 GO:0016887
Lapu1g00284 1058 SMART AAA_5 454 590 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00284 Lapu-Chr1 11281879 11301378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00284 7 1044 Calmodulin-binding Proteins AT3G56690 54.511 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00284 - - vum:124834498 1828.14