Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00281 ATGAAGTCTTGGTCAGTGGATGACTGGAGGAAGTACTTTGGGTCTGCGAATTCGGATATATTTGAGATAATTGAGAACGCGATAAACGTGGCGGCTGCGGATTGTCCGAAGGAGTTTAGAGTGAAGAGGGATACGATTGCGGAGAGGCTGTTCTGTTCCAGGTTGACTCGCTGTGTGGGGTGTGACCGTGTGGGGTTGGCTGCGAGGGGAGTTGGTAAGGAGAGTGATGATGGAGGTTGCAAGAATGGGGCTGAAAGAGATGGGGCTGAGTTAGCAGGGGCAAGCAAAGAGAGCAAGGTCAATGAAGGTGGAGATGAGGATGCAGAGATTGATGTGAAAGGTGTTAGCAACTATAGTTTTGGTGAGGCTGAGGCATTAACTGATGAGATGGACGAAGAGACTCAGTATATAGGAGAGATTTTGAGGATCAAAGGTGTTCTGTTTAACCGTGAAGAAGAGTCTGAGTCAGTGTTATTTGATTCGCTGAGGAGGCTTCAACTGATGGAGCTAAGCGTGGATTGTCTAAAGGCTACTGAGATTGGAAAGGCTGTTAATCCTCTCCGTAAACGCGGATCAAAGGATATTCGTCAACTTGCAAAGACACTTATCGATGGCTGGAAAGAAATGGTTGATGAATGGGTGAAGGCTACGGCTACTACAGCTATTGCAGCTTCAGATGAAGGGACACCAGATTCAGTTAATCCATCTGTCGTTGATGATGACGAAGAAGGACTTCCATCACCTCCTATGGATGAAGGGGCCTTCTTTGTTGCTCCAACTGGTTCCATAGAACTTTCTCAGTTCTTTGATGGCATGGACGATGATGGAAATCCTAGACCAAGTGGCCCATCCCACAAGAACCGTGAGAATTATGGCAGAAAGCCTGCGATCCCTAACAGGGAGGATAAGAGTCAACAAGCAAAGAGAAATGAAGCTGCTGTGCCCGTGAGGCCAATTAAGCCAGTAACCTCTGATTCTGGCCCTGGCAGACCCCTCCAATCTAATATGCAGAGAAAAACTAATGTGGAGCCAAAGATGCAGCAAAAAATAGAGAACAATTCAATCACAAGGAGGCCTCCCATTGGTCAGCTAGATAAATCCATGCATTCAGATGATGCGGCTGTCCAAGTAAAGCTAGAAGCCACCAAGAGGAAACTTCAGGAGAGTTATCAACAAGCTGAAAATGCCAAGAGGCAGAGAACAATACAAGTCATGGAACTAAATGATCTCCCCAAGCAAGTTAACTACCGAAATCCACATCCCAAGGCCGGTTATCACAATAGGAACCGGCCTAATGCTCGAAGGTAG 1308 0.4671 MKSWSVDDWRKYFGSANSDIFEIIENAINVAAADCPKEFRVKRDTIAERLFCSRLTRCVGCDRVGLAARGVGKESDDGGCKNGAERDGAELAGASKESKVNEGGDEDAEIDVKGVSNYSFGEAEALTDEMDEETQYIGEILRIKGVLFNREEESESVLFDSLRRLQLMELSVDCLKATEIGKAVNPLRKRGSKDIRQLAKTLIDGWKEMVDEWVKATATTAIAASDEGTPDSVNPSVVDDDEEGLPSPPMDEGAFFVAPTGSIELSQFFDGMDDDGNPRPSGPSHKNRENYGRKPAIPNREDKSQQAKRNEAAVPVRPIKPVTSDSGPGRPLQSNMQRKTNVEPKMQQKIENNSITRRPPIGQLDKSMHSDDAAVQVKLEATKRKLQESYQQAENAKRQRTIQVMELNDLPKQVNYRNPHPKAGYHNRNRPNARR* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00281 435 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 217 IPR035441 -
Lapu1g00281 435 MobiDBLite consensus disorder prediction 279 308 - -
Lapu1g00281 435 MobiDBLite consensus disorder prediction 408 435 - -
Lapu1g00281 435 MobiDBLite consensus disorder prediction 267 343 - -
Lapu1g00281 435 MobiDBLite consensus disorder prediction 327 343 - -
Lapu1g00281 435 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Lapu1g00281 435 SMART TFS2_5 137 212 IPR003617 GO:0005634
Lapu1g00281 435 MobiDBLite consensus disorder prediction 222 251 - -
Lapu1g00281 435 Coils Coil 376 403 - -
Lapu1g00281 435 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Lapu1g00281 435 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 425 IPR044805 -
Lapu1g00281 435 CDD TFIIS_I 137 211 - -
Lapu1g00281 435 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 223 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00281 Lapu-Chr1 11173307 11176069 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lapu1g00281 Med26 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00281 - - gmx:100799367 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00281 1 11173307 11176069 Lapu1g00281 1 11173307 11176069 ECH