Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00280 ATGGACCACGCAGAACTCTTTCCATCGTCAGACAAATTCCTGCTCGGCTTCATCTATGCCAACATCGTCGGCGTGCAGCACCACTACGGCGCCATCCGCGGCCGCGCCTTGGTCGCCCTCCTCCGTGAGCCCCACAACATCCACGACGCCAACGCCATCAAAGTCCTCAACATACACAGCCAGACCATCGGCTACATTGAACGCGACGTCGTCGCCGTCCTCTCTCCTCTCATCGACAACAACCTCATCACCGTAGAAGCCATCGTACCCGAAGCCAGCCGCAAAGCCTACCGAATCCTCTGCCAAATCCACGTCTTCGCCCGCCTCCATGACTTTGAAGCCGCCAAAGACGCCTTTTCCCGTTCCTACCTCAGACTCATCACCGAGTCCGAACCCTCCTTCACCCTCTCTGACTCCGCCGCTGTTAAGGCCACCAAGGCGCAGAAGAAGTCCATGACCGTCGACGCCATTTTCGACCTCGTCAACAGCAACCTCGCAAACAAGAACCGTACCATCGATATCTTGGAGCCTCCCAGGAGCATCATCAGAACCGAGCTTCTCCCTCACCAGAAGGAGGGTCTCGCGTGGCTTGTTCGCCACGAAAATGCTGATGAGTTGCCACCCTTTTGGGAAGCAAACGATGGCAAGTTCGTAAATATCTTAACCGATTATCAAACCGATAGAAGGCCTGACCCTTTGCGAGGAGGCATCTTCGCCGATGAGATGGGTTTAGGAAAGACCTTAACTTTGCTTTCTCTGATTGCTTTTGATAAAAGGAGCCAAATGGGTGTCTCTAAGAAATGGAGAACGGACAGAAAGTCAGCTTCTATAGAGAAACGACGCAGGAACGAAGGCGAGTGCTCCCTTGGAACAGGAATGAGAACAAATGCCACGTTGGTGGTGTGTACTCCTTCTGTTATGTCGGTATGGATAAAGCAGTTGGAGGATCACACTGTGCCTGGTGCATTGAAGACTTACTTGTATTATGGGGAAAGGACAGAGGATGCTGAGGAGCTTAAGAAGTATGATTTGGTGTTGACTACTTACTCTACTTTGTCTAATGAATCTGTGGAGAAGCCGGCGAAGGAAATGAAGTGGCGGAGAATTATATTGGACGAAGCACACACCATCAAGAATTTCACTGCCAAACAGAGTAAGGCGGTTTCAAGTTTGGAAGGTAAGTACAGATGGGCAGTCACAGGGACACCGATTCAAAGTGGTTGCATTGATTTGTTTTCTATCATGGTCTTTTTGCGGTTCGATCCGTTTTCGGTGCGAACACATTGGAGAGAGTATGTGCAACGCCCTCTTAATCAGGGCTTAGAAAAAGGGCTCTCACGATTGCAGGTTTTGATGGAAGCAATTGCTTTGCGAAGAACAAAAGATATGGCATTGGTGTGTCTGCCACCTAAAACCGTTGAGATTTGTTATGTTGAGCTCTCTATGGAAGAACGTATGCTGTATGATCGGGAGAAAGAGAGAACAAAGGAATTGTTGAGAAGAAGTTTTATCTATGGGGGCAATCCACTTTCCGAGTATACCGAGATGCTAAGTAGTATTCTAAGACTTCGCCAAATCTGTACTGATTTCAATTTGTATGAATTTCAGTCACAACGCAGCCTTGCAGATAGTGAAGGAGAAGAAATTGTTTTTTATAATCCTGAATTGCTGCAAACATTACTTGGGCAGCTGCAAGAAGGGGAAGATTTTGAATGTCCAATTTGTTTATCTCCTCCAATGGATTTGGTGATCACACGTTGTGCTCACATTTTCTGCGGAGACTGTATCCTGAGATCTCTGCAAGAGAGGAGCGCCAGTGGCTGTCCTCTTTGCCGGCGAACACTCTCAGAATCTGACTTGTTCTCAGCCCCTCCCCAGCCTGCAGAGACAGACAGTGCTGAACTGAACTCAGCATCAGAAACACCGTTTTCGTCCAAGGTTTCTACCCTGATAAAACTTCTTAATGAATCAAGGGACCAACATCCAGGCGTAAAATCTGTTGTATTTTCTCAATTTCGAAAGTTGCTGCTGTTAATTGAAGAGCCTCTGAAGGCAGCTGGTTTCAAGACTTTGCGTCTTGATGGGACAATGAATGCTAGACACAGGGCCAATGTTATTGAGAAGTTTCAAGTCCAAGAAAGTGATGGTCCAACAGTTCTGCTTGCAAGCCTCAGGGCTTCAAGTTCAGGTATAAATCTCACTGCTGCCTCTAGGCTCTACTTTATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCGATGGATCGTGTCCACCGCATTGGACAGAAAGAGCCCGTGAAGATTGTTCGATTCATTGCTCAAAACAGCATTGAAGAGAAAATATTGGTGCTGCAGGAGAGGAGGAAAGAACTGTCCACGGAAGAACCATCTGAGACGGGATCAAGGGGCATGGGCATGAAAGATATCAGATTCCTTCTAGATTCCTAG 2451 0.4786 MDHAELFPSSDKFLLGFIYANIVGVQHHYGAIRGRALVALLREPHNIHDANAIKVLNIHSQTIGYIERDVVAVLSPLIDNNLITVEAIVPEASRKAYRILCQIHVFARLHDFEAAKDAFSRSYLRLITESEPSFTLSDSAAVKATKAQKKSMTVDAIFDLVNSNLANKNRTIDILEPPRSIIRTELLPHQKEGLAWLVRHENADELPPFWEANDGKFVNILTDYQTDRRPDPLRGGIFADEMGLGKTLTLLSLIAFDKRSQMGVSKKWRTDRKSASIEKRRRNEGECSLGTGMRTNATLVVCTPSVMSVWIKQLEDHTVPGALKTYLYYGERTEDAEELKKYDLVLTTYSTLSNESVEKPAKEMKWRRIILDEAHTIKNFTAKQSKAVSSLEGKYRWAVTGTPIQSGCIDLFSIMVFLRFDPFSVRTHWREYVQRPLNQGLEKGLSRLQVLMEAIALRRTKDMALVCLPPKTVEICYVELSMEERMLYDREKERTKELLRRSFIYGGNPLSEYTEMLSSILRLRQICTDFNLYEFQSQRSLADSEGEEIVFYNPELLQTLLGQLQEGEDFECPICLSPPMDLVITRCAHIFCGDCILRSLQERSASGCPLCRRTLSESDLFSAPPQPAETDSAELNSASETPFSSKVSTLIKLLNESRDQHPGVKSVVFSQFRKLLLLIEEPLKAAGFKTLRLDGTMNARHRANVIEKFQVQESDGPTVLLASLRASSSGINLTAASRLYFMEPWWNHAVEEQAMDRVHRIGQKEPVKIVRFIAQNSIEEKILVLQERRKELSTEEPSETGSRGMGMKDIRFLLDS* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00280 816 ProSiteProfiles Zinc finger RING-type profile. 572 612 IPR001841 -
Lapu1g00280 816 Pfam SNF2-related domain 189 531 IPR000330 GO:0005524|GO:0140658
Lapu1g00280 816 Gene3D - 8 126 - -
Lapu1g00280 816 SMART helicmild6 677 762 IPR001650 -
Lapu1g00280 816 Pfam Helicase conserved C-terminal domain 646 762 IPR001650 -
Lapu1g00280 816 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 145 812 - -
Lapu1g00280 816 Pfam HIRAN domain 16 104 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lapu1g00280 816 Pfam Zinc finger, C3HC4 type (RING finger) 569 616 - -
Lapu1g00280 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 795 IPR027417 -
Lapu1g00280 816 SMART ultradead3 182 433 IPR014001 -
Lapu1g00280 816 Gene3D - 224 460 IPR038718 -
Lapu1g00280 816 SUPERFAMILY RING/U-box 553 618 - -
Lapu1g00280 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 459 IPR027417 -
Lapu1g00280 816 CDD SF2_C_SNF 644 773 - -
Lapu1g00280 816 Coils Coil 775 795 - -
Lapu1g00280 816 SMART HIRAN_2 15 109 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lapu1g00280 816 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 421 IPR014001 -
Lapu1g00280 816 ProSitePatterns Zinc finger RING-type signature. 587 596 IPR017907 -
Lapu1g00280 816 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 555 640 IPR013083 -
Lapu1g00280 816 SMART ring_2 572 611 IPR001841 -
Lapu1g00280 816 Gene3D - 469 814 IPR027417 -
Lapu1g00280 816 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 806 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00280 Lapu-Chr1 11057927 11062024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00280 10 795 RAD5 or RAD16-like Gene Family AT5G05130 53.713 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu1g00280 SNF2_N 3.7e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00280 K15711 - gmx:100791783 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00280 1 11057927 11062024 Lapu1g00280 1 11057927 11062024 ECH