Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00277 ATGGATCCAGAGGCTGCACGAGCTGCTCGAGAATCTCTAGACCTGGCATTCCATATGTCCAATATACTTGATACGGGTCTAGACCGTCACACACTTTCTGTTCTAATTGCACTTTGTGATCTTGGGGTCAATCCTGAAGCACTTGCTGCTGTTGTCAAGGAACTAAGAAAAGAGAAAACTACACTTTTCACAGATACGACCATGCTACCTCACTCATTTACTATGATTGCAACAATAATTATTGTTCTTGCACAAACATTTGTGGGAGTGAGTTCACTTCCTGAATCTGATAAAATAAGCAATTTGCCGGGGCAGCCTCTGGTCAAATTTCAGCAATATTCTGGCTACATTACAGTGGATGATCAGCACCAGAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGAAGACCCTGCTTCCAAGCCATTAGTCCTCTGGTTGAATGGAGGGCCTGGTTGTTCATCGATTGGAGTTGGAGCTTTTGCTGAGCATGGCCCTTTCAGACCGAGTGACGACAATGTTCTTGAGAAAAATGATTATAGTTGGAACAAAGAGGCAAATGTGCTATACTTGGAGTCACCAGCTGGTGTTGGATTCTCTTACTCCAGCAATAAATCCTTCTATGTATTAGTGTCAGATGAAATTACAGCTAGGGATAATCTTGTGTTCCTACAGCGTTGGTTCACTAAATTTCCTGAGTACTCAAGTAATGACTTCTTCATTACTGGGGAGAGCTACGGAGGTCACTATGTTCCACAACTTGCACAGCTAATTGTTCAAACCAAGACCAACTTCAATCTCAAGGGGATAGCAATAGGGAATCCTCTTCTGGAGTTTAATATTGATTTCAACGCCAGATCTGAGTATTTTTGGTCTCACGGACTGATATCAGATTCAACATTCGAAGTCTTAACTAGAGTCTGCAACTACTCCTCAATTAGGAGACAACGTCAAAATGGGAATCTTGGAGGGGTTTGTGCAAAAGCAAGCAACCAATTGTATGCTGAGGTTAGCGACTATGTAGATGAATATGATGTCACTCTAGATGTTTGTCTGTCATCCGTAAATCAACAGGCTTATGTTCTGAATCAACTGCAAGAGACTCAAAATATAGATGTTTGTGTTGGTGATAAAACAACCACCTACTTGAACAATAAAGAAGTCCAAGAAGCTCTACATGCTAAACTTGTAGGAGTCACCAAATGGTCAACTTGCAGTTCAGTTATGCATTATGACTATAGCAATCTAGAAATACCAACAATTCCTATTCTAGGGTCACTTGTTAAGTCTGGCATCAGGGTCCTGGTATACAGTGGTGATCAAGATTCAGTGATTCCATTAATAAGTTCGAGATATCTGGTGAACGAATTAGCCAAGGAAATTGGACTTGAGACAACAGTGGCCTATAGAGCCTGGTTTGAGAAAAAACAGGTAGCAGGATGGACACAAACATACGGGGACATGTTATCATATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCTTTACTCAACCTCAAAGATCATTAGTTCTTCTTAAAGCATTTCTGGAAGGAAAGCAACTACCTAGTGTTCACCTTCATCCTCCAATTAAACAAGCAAATCAATGTGACCATGTTATCTCATTCATTTACTATGATTGCAACAATAATTATTGTTCTTGCACAAACACTTCAGAGTGTGAGTTCACTTCCTGA 1698 0.4069 MDPEAARAARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELRKEKTTLFTDTTMLPHSFTMIATIIIVLAQTFVGVSSLPESDKISNLPGQPLVKFQQYSGYITVDDQHQRALFYYFVEAEEDPASKPLVLWLNGGPGCSSIGVGAFAEHGPFRPSDDNVLEKNDYSWNKEANVLYLESPAGVGFSYSSNKSFYVLVSDEITARDNLVFLQRWFTKFPEYSSNDFFITGESYGGHYVPQLAQLIVQTKTNFNLKGIAIGNPLLEFNIDFNARSEYFWSHGLISDSTFEVLTRVCNYSSIRRQRQNGNLGGVCAKASNQLYAEVSDYVDEYDVTLDVCLSSVNQQAYVLNQLQETQNIDVCVGDKTTTYLNNKEVQEALHAKLVGVTKWSTCSSVMHYDYSNLEIPTIPILGSLVKSGIRVLVYSGDQDSVIPLISSRYLVNELAKEIGLETTVAYRAWFEKKQVAGWTQTYGDMLSYATIRGASHEAPFTQPQRSLVLLKAFLEGKQLPSVHLHPPIKQANQCDHVISFIYYDCNNNYCSCTNTSECEFTS* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00277 565 Pfam Mitotic-spindle organizing gamma-tubulin ring associated 10 56 IPR022214 GO:0000931|GO:0033566
Lapu1g00277 565 ProSitePatterns Serine carboxypeptidases, histidine active site. 489 506 IPR033124 GO:0004185
Lapu1g00277 565 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 97 506 IPR001563 GO:0004185|GO:0006508
Lapu1g00277 565 PRINTS Carboxypeptidase C serine protease (S10) family signature 227 252 IPR001563 GO:0004185|GO:0006508
Lapu1g00277 565 PRINTS Carboxypeptidase C serine protease (S10) family signature 489 502 IPR001563 GO:0004185|GO:0006508
Lapu1g00277 565 PRINTS Carboxypeptidase C serine protease (S10) family signature 178 190 IPR001563 GO:0004185|GO:0006508
Lapu1g00277 565 PRINTS Carboxypeptidase C serine protease (S10) family signature 191 201 IPR001563 GO:0004185|GO:0006508
Lapu1g00277 565 FunFam Carboxypeptidase 92 523 - -
Lapu1g00277 565 ProSitePatterns Serine carboxypeptidases, serine active site. 241 248 IPR018202 GO:0004185
Lapu1g00277 565 Pfam Serine carboxypeptidase 104 519 IPR001563 GO:0004185|GO:0006508
Lapu1g00277 565 Gene3D alpha/beta hydrolase 91 522 IPR029058 -
Lapu1g00277 565 SUPERFAMILY alpha/beta-Hydrolases 101 522 IPR029058 -
Lapu1g00277 565 FunFam Carboxypeptidase 420 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00277 Lapu-Chr1 10922614 10947643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00277 382 522 Calmodulin-binding Proteins AT2G22960 31.915 1.59e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00277 K16297 - gmx:100799900 824.698