Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00276 ATGGCAAAGCGTTTGATTCCACTGTTCAATCGTGTTTTGGTGGAGAAAATTGTGCCTCCATCAAAGACCAACGCTGGCATTTTGTTACCGGAGAAATCCTCCAAGCTGAATTCCGGTAAAGTTATTGCTGTTGGTCCTGGCATTCATAGTAAGGATGGGAAGCTAATTCCAGTGGCTGTAAATGAAGGTGACACTGTTCTTTTGCCTGAGTATGGGGGAACTGAGGTGAAGCTTGACAACAAAGAGTATGTATATGTTTTTATGACCTGTTTTATTTATTAG 282 0.4149 MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKSSKLNSGKVIAVGPGIHSKDGKLIPVAVNEGDTVLLPEYGGTEVKLDNKEYVYVFMTCFIY* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00276 93 Gene3D GroES chaperonin 1 89 IPR037124 GO:0006457
Lapu1g00276 93 SUPERFAMILY GroES-like 4 85 IPR011032 -
Lapu1g00276 93 Pfam Chaperonin 10 Kd subunit 5 86 IPR020818 GO:0005524|GO:0006457|GO:0044183
Lapu1g00276 93 SMART Cpn10_2 4 85 IPR020818 GO:0005524|GO:0006457|GO:0044183
Lapu1g00276 93 CDD cpn10 4 84 IPR020818 GO:0005524|GO:0006457|GO:0044183
Lapu1g00276 93 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 85 IPR020818 GO:0005524|GO:0006457|GO:0044183
Lapu1g00276 93 FunFam 10 kDa chaperonin, mitochondrial 1 89 - -
Lapu1g00276 93 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Lapu1g00276 93 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Lapu1g00276 93 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00276 Lapu-Chr1 10919959 10920718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00276 3 84 Calmodulin-binding Proteins AT5G20720 40.476 2.55e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00276 K04078 - gmx:100306384 162.155