Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00271 ATGCACCACTTTGCCATGGACAACTCTCACCTTCTCCAATTCCTTCCCACCGCCACCGCCGCCACCACCTCCAACCCCTTCTTCCACACTTCACCTCACACCACCAACATCATGCACCAACACCACACCCTCTCCAATAACTCCTCCTCCAATAACTTCTACCCCTTTCATGTCTCCCAAATTACCCCCACACCCTCCCACCATGATAGAGCCCTAGCTGCCATGAAGAACCACAAGGAGGCTGAGAAGAGAAGGAGGGAGCGAATCAACTCCCACCTCGATGAGCTTCGCACTCTTCTCCCTTGCAATTCCAAGACAGACAAGGCTTCGCTTCTGGCAAAGGTTGTGCAGCGAGTGAAGGAGTTGAAGCAGCAGACGTCGGAGATAACGGAGCTGGAGACGGTTCCGTCGGAAACTGACGAGATCACGGTACTCTCTACCGGCGGGGACTACGGCGGCGATGGGAGGCTGGTATTCAAGGCCTCCCTGTGCTGCGAGGACCGCTCCGACCTCATCCCGGACCTCATAGAAATCCTGAACTCGCTTCACCTGAAAACCCTCAAAGCAGAAATGGCCACGCTTGGAGGAAGAACGCGCAACGTTCTGGTGGTGGCTGCAGACAAAGAACACAGCATTGAATCCATCAATTTCCTTCAGAACTCGCTCAAGTCCTTGCTAGACAGGTCAAATTCCAGCGACAGGTCAAAACGACGCCGTGGCCTGGACCGAAGACTAATGTCTTAA 744 0.5417 MHHFAMDNSHLLQFLPTATAATTSNPFFHTSPHTTNIMHQHHTLSNNSSSNNFYPFHVSQITPTPSHHDRALAAMKNHKEAEKRRRERINSHLDELRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGDYGGDGRLVFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESINFLQNSLKSLLDRSNSSDRSKRRRGLDRRLMS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00271 247 Coils Coil 79 99 - -
Lapu1g00271 247 PANTHER TRANSCRIPTION FACTOR BHLH30 38 241 IPR045847 GO:0003700|GO:0006355
Lapu1g00271 247 MobiDBLite consensus disorder prediction 229 247 - -
Lapu1g00271 247 Gene3D - 68 134 IPR036638 GO:0046983
Lapu1g00271 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Lapu1g00271 247 MobiDBLite consensus disorder prediction 228 247 - -
Lapu1g00271 247 SMART finulus 79 128 IPR011598 GO:0046983
Lapu1g00271 247 CDD bHLH_AtAIG1_like 69 144 - -
Lapu1g00271 247 FunFam transcription factor bHLH30 68 131 - -
Lapu1g00271 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 130 IPR036638 GO:0046983
Lapu1g00271 247 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00271 Lapu-Chr1 10782196 10784222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00271 53 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 68.306 1.00e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g00271 HLH 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00271 - K22484 gmx:100802566 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00271 1 10782196 10784222 Lapu1g00271 1 10782196 10784222 ECH