Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00267 ATGCCTTACACGGTCCGAGAGAACCTCTCGATCGGCAACATCGGCGACGCGGCGGAGATTCTTCAAAACGACACCGTTCACAGCGTCACGCACATTCTCTCCGTCCTCAGCTCCGCTTCCATCTCCTTCTTCTCGGAATGGCGTCCCAGCCTCTCCATCCCTGCCAAGGAAATCACCAAAGTCCACGTAGCGGACGCCGGGGCTGGCGCCGCCAAATCGGCGCTCTCGCCGGAGAAGCTTCTTTACTCGCTCGAGTACGCCGGTCGCGACCTTAAGCTCGTGAGGATGGCCGTGCCTCTCCGAGACACCGAGAACGAGAACTTGTTGGATTACCTGGAAGTTTGCATCGATTTCATTGATCGCGGTCGGAAGGAAGGTTCCGTTCTCGTCCACTGTTTTGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACGGCATATTTGATGAAAACAGAACGTTTATCTGTAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAAAATGTTTGTCCCAATGAAGGTTTTCAAGAGCAGTTGAAACTGTTTGAGGAGATGGGTTTCAAGGTTGATCACTCCAGCCCTATATACAAGCGCTTTCGTCTAAAAATACTAGGTGAGAATCATTTATCAGGGTTGAGGATAGACAGTTCTAAACTAGGTGCAGATCCTGGCATGCCTGTCGAAATTTCTTCTGGGGCAGAAGAAACTACTAAAGTAGAAAATAATCGTAGACCTACATATCGTTGTAGGAAGTGCCGACGACTTGTTGCATTGCAAGAACATGTCATTGATCATGTTCCCGGTGAGGGTGAGACGGCCTTTGGGTGGAACAAACGAAGAGGTGGCAATCCTTTTAACAAATCTAATGAATCTGACTGTTCATCCATATTTATTGAGCCTCTGCGGTGGATGAAAGCTGTTGAGGAAGGTGCATTGGAGGGAAAGCTGTCTTGTGTTCACTGTGATGCCCGTTTGGGATACTTCACTTGGGCAGGCATACAATGCAGCTGCGGAAGCTGGATAACCCCAGCTTTTCAACTCCACAAAAGCCGGATAGACATAAGCCCCATGTAA 1074 0.4953 MPYTVRENLSIGNIGDAAEILQNDTVHSVTHILSVLSSASISFFSEWRPSLSIPAKEITKVHVADAGAGAAKSALSPEKLLYSLEYAGRDLKLVRMAVPLRDTENENLLDYLEVCIDFIDRGRKEGSVLVHCFAGVSRSAAVITAYLMKTERLSVEDALESLRQSCENVCPNEGFQEQLKLFEEMGFKVDHSSPIYKRFRLKILGENHLSGLRIDSSKLGADPGMPVEISSGAEETTKVENNRRPTYRCRKCRRLVALQEHVIDHVPGEGETAFGWNKRRGGNPFNKSNESDCSSIFIEPLRWMKAVEEGALEGKLSCVHCDARLGYFTWAGIQCSCGSWITPAFQLHKSRIDISPM* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00267 357 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 353 - -
Lapu1g00267 357 Pfam Dual specificity phosphatase, catalytic domain 94 184 IPR000340 GO:0008138|GO:0016311
Lapu1g00267 357 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 106 164 IPR000387 GO:0016311|GO:0016791
Lapu1g00267 357 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 188 IPR020422 GO:0006470|GO:0008138
Lapu1g00267 357 CDD DSP_DUSP12 5 190 - -
Lapu1g00267 357 FunFam Dual specificity protein phosphatase 12-like 4 205 - -
Lapu1g00267 357 SMART dsp_5 1 185 IPR020422 GO:0006470|GO:0008138
Lapu1g00267 357 Gene3D Protein tyrosine phosphatase superfamily 4 205 IPR029021 -
Lapu1g00267 357 ProSitePatterns Tyrosine specific protein phosphatases active site. 130 140 IPR016130 GO:0016311|GO:0016791
Lapu1g00267 357 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 6 188 IPR029021 -
Lapu1g00267 357 PIRSF DUSP12 3 43 IPR016278 GO:0006470|GO:0008138
Lapu1g00267 357 PIRSF DUSP12 85 357 IPR016278 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00267 Lapu-Chr1 10486690 10490630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00267 93 184 Protein tyrosine phosphatase (PTP) family AT3G06110 37.634 7.71e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00267 K14819 - gmx:100804683 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00267 1 10486690 10490630 Lapu1g00267 1 10486690 10490630 ECH