Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00248 ATGTCCCTTGAAGACTCTCTAAGATCTCTCTCCCTCGATTACCTCAACCTCCTCATCAACGGCCAGGCCTTCAGCGACGTCACTTTCAGCGTCGAGGGTCGTCTCGTCCACGCCCACCGCTGCATACTCGCCGCCCGCAGCCTCTTCTTCCGCAAATTCTTCTGCGGCCCGGACCCTCCCTCCGGCCTCGACCCCGCCGGCCCAAGACTCAACTCCCGCTCCGGCGTCATCCCAGTCAACTCCGTCGGCTACGAGGTTTTCCTTCTCATGCTCCAGTTCCTCTACAGTGGCCAGGTCTCCATCGTCCCTCAGAAGCACGAGGCCCGCCCCAATTGCGGTGAGCGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTCGATCTCGCCCTCGACACCCTCGCGGCCGCCAGATACTTCGGCGTCGAACAGCTCGCATTGCTTACCCAGAAACAACTTGCGAGCATGGTGGAGAAAGCCTCCATAGAAGATGTAATGAAAGTGCTGTTGGCTTCGAGAAAGCAAGACATGCAGCAACTATGGGCCACTTGTTCTCACTTGGTAGCAAAATCAGGTCTTCCTCCCGAGGTTCTCGCCAAGCACCTCCCCATAGACATTGTGGCCAAGATCGAAGAGCTACGTATCAAATCCTCCATGGCGCGCCGCTCCTTGGTGCCACACCCCCACCACCACCACCCCCACCACCACCACGCCGCCCTCGACCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCCCTGGACTCCTCCGATGTCGAACTCGTAAAACTCATGGTAATGGGGGAGGGTCTCAACCTCGACGAAGCACTGGCCTTACCCTACGCGGTGGAGAACTGCAGCAGAGAAGTGGTGAAGGCATTGCTTGAACTCGGTGCAGCCGATGTCAACTACCCCTCCGGCCCCGCCGGGAAGACACCGCTCCACATTGCAGCGGAGATGGTGTCGCCAGACATGGTGGCGGTGCTGCTGGACCACCACGCGGACCCGAATGTGAGAACGGTTGATGGGGTCACGCCATTAGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTTAAGGGTGCTGTCCCAGGATTGACCCACATCGAACCCAACAAACTGAGGCTGTGTTTGGAGCTTGTTCAATCCGCAGCTCTTGTCATGTCACGAGAAGAAGGCAATGCCAACAACAACAACGCTACATCTAATTCCGCAGCACCCATTTACCCTCCTCCCATGAACGATGACCACAACAGCAGTAGTAGCAGCGGCAACAACAATATTGGAAATCTCAACTTGGATTCAAGGTTGGTGTATCTCAACCTTGGTGCCACCGCTTCCATGAGTTCCCGATTGGACGGGGGTGAGGACGAGAGAGAAGCCATGAACACAACCATGTACCACCACCACCACTCCCATGATTTCTAG 1425 0.5712 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPAGPRLNSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRIKSSMARRSLVPHPHHHHPHHHHAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNNATSNSAAPIYPPPMNDDHNSSSSSGNNNIGNLNLDSRLVYLNLGATASMSSRLDGGEDEREAMNTTMYHHHHSHDF* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00248 474 ProSiteProfiles BTB domain profile. 25 103 IPR000210 GO:0005515
Lapu1g00248 474 Pfam Ankyrin repeats (3 copies) 256 338 IPR002110 GO:0005515
Lapu1g00248 474 SUPERFAMILY POZ domain 8 154 IPR011333 -
Lapu1g00248 474 Gene3D - 235 356 IPR036770 -
Lapu1g00248 474 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Lapu1g00248 474 SMART BTB_4 25 156 IPR000210 GO:0005515
Lapu1g00248 474 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
Lapu1g00248 474 CDD BTB_POZ_NPR_plant 8 156 - -
Lapu1g00248 474 Gene3D Potassium Channel Kv1.1; Chain A 4 189 IPR011333 -
Lapu1g00248 474 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 465 IPR044284 GO:0099402
Lapu1g00248 474 Pfam BTB/POZ domain 16 105 IPR000210 GO:0005515
Lapu1g00248 474 MobiDBLite consensus disorder prediction 391 426 - -
Lapu1g00248 474 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Lapu1g00248 474 SMART ANK_2a 273 303 IPR002110 GO:0005515
Lapu1g00248 474 SMART ANK_2a 308 337 IPR002110 GO:0005515
Lapu1g00248 474 FunFam regulatory protein NPR5 isoform X2 239 356 - -
Lapu1g00248 474 Pfam Domain of unknown function (DUF3420) 191 250 IPR024228 -
Lapu1g00248 474 FunFam regulatory protein NPR5 isoform X1 4 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00248 Lapu-Chr1 9872480 9876897 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu1g00248 Ank_2 5.6e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00248 K14508 - gmx:100816086 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00248 1 9872480 9876897 Lapu1g00248 1 9872480 9876897 ECH